Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10543
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 1.1
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 31 1.1
L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical pr... 28 5.8
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 105 bits (252), Expect = 3e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +1
Query: 55 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 234
VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL ++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 235 RSFRKF 252
FRKF
Sbjct: 77 ADFRKF 82
Score = 104 bits (250), Expect = 5e-23
Identities = 51/88 (57%), Positives = 62/88 (70%)
Frame = +3
Query: 240 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 419
F + +LIAE VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I
Sbjct: 79 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138
Query: 420 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 503
FT K +KT Y + +++R IR +M
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEM 166
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/71 (53%), Positives = 56/71 (78%)
Frame = +2
Query: 491 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 670
+ E + I ++VT +L+EVV+KLIPDSI KDIEK C +YPL++V IRKVK++KRP+ +
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVD 222
Query: 671 ISKLMELHGES 703
+ +L +LHG+S
Sbjct: 223 LGRLHDLHGDS 233
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Frame = +3
Query: 417 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*TS*FLTPLPRTSRR 596
IGF ++ L + C + Q R ++ C S + S+ G W T SR
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTTCSATCGEGLQSRE 927
Query: 597 PAMASTLCAM-FASER*KC*RGPVSRSRS*WN 689
+ C AS+ +C GP S W+
Sbjct: 928 RSCRRGSCTEDDASQTRRCVNGPCEHSYLTWS 959
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Frame = +3
Query: 417 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*TS*FLTPLPRTSRR 596
IGF ++ L + C + Q R ++ C S + S+ G W T SR
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTTCSATCGEGLQSRE 927
Query: 597 PAMASTLCAM-FASER*KC*RGPVSRSRS*WN 689
+ C AS+ +C GP S W+
Sbjct: 928 RSCRRGSCTEDDASQTRRCVNGPCEHSYLTWS 959
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Frame = +3
Query: 417 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*TS*FLTPLPRTSRR 596
IGF ++ L + C + Q R ++ C S + S+ G W T SR
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTTCSATCGEGLQSRE 927
Query: 597 PAMASTLCAM-FASER*KC*RGPVSRSRS*WN 689
+ C AS+ +C GP S W+
Sbjct: 928 RSCRRGSCTEDDASQTRRCVNGPCEHSYLTWS 959
>L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical
protein F54H12.8 protein.
Length = 570
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 683 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 543
S+S S N ASST S + R +P+ PWQ Q S +PPP
Sbjct: 94 SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142
>Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical
protein C33D9.6 protein.
Length = 485
Score = 28.3 bits (60), Expect = 5.8
Identities = 25/106 (23%), Positives = 45/106 (42%)
Frame = +2
Query: 383 DNRWIRSTCLLHWFHQ*GLLEPTQDVLRPAHSGQSNQKENV*IITRDVTNSELREVVNKL 562
+ R +TC L H L E Q +L ++N+ ++V +TR++ + ++
Sbjct: 197 EEREYETTCQLTMKHSLELAEKDQKILELEKYIRNNENQDVVALTRELERLRSQATKDEP 256
Query: 563 IPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 700
D I A H R + K++K E+SK E++ E
Sbjct: 257 STDDSTIKISMAQH-----RLELEAQAKMIKTLEAELSKRQEINAE 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,349
Number of Sequences: 27780
Number of extensions: 367773
Number of successful extensions: 1068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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