Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10543
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           126   1e-29
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   126   1e-29
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    30   1.3  
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    29   2.3  
At4g11720.1 68417.m01870 hypothetical protein                          28   7.1  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   7.1  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   7.1  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  126 bits (304), Expect = 1e-29
 Identities = 58/90 (64%), Positives = 72/90 (80%)
 Frame = +3

Query: 240 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 419
           + +I+L AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140

Query: 420 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 509
            FT + +   ++TCYAQ +Q+R IR+KM E
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMSE 170



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 49/65 (75%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
 Frame = +1

Query: 55  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 231
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNA 80

Query: 232 ERSFR 246
            R  R
Sbjct: 81  YRKIR 85



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 33/64 (51%), Positives = 53/64 (82%)
 Frame = +2

Query: 509 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 688
           I+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLME
Sbjct: 171 IMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLME 230

Query: 689 LHGE 700
           +HG+
Sbjct: 231 VHGD 234


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  126 bits (304), Expect = 1e-29
 Identities = 57/88 (64%), Positives = 71/88 (80%)
 Frame = +3

Query: 240 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 419
           + +I+L AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCI 140

Query: 420 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 503
            FT + +   ++TCYAQ +Q+R IR+KM
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKM 168



 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
 Frame = +1

Query: 55  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 231
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNA 80

Query: 232 ERSFR 246
            R  R
Sbjct: 81  YRKIR 85



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/64 (50%), Positives = 53/64 (82%)
 Frame = +2

Query: 509 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 688
           I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLM+
Sbjct: 171 IMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMD 230

Query: 689 LHGE 700
           +HG+
Sbjct: 231 VHGD 234


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 628 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDSH 503
           +IAQRV  +AG+  +  N +    V  LP F    + C+D+H
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSDAH 467


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -2

Query: 497 LSDCSDLSVLGVARLALAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 351
           LS+ +  SV+  A + +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 440 LSNINSSSVVAAASV-VARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 473 HSGQSNQKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 640
           H GQ +      ++ RD ++S     ++++  DS  K   +A HGI   RDV + +
Sbjct: 594 HHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGIVLPRDVHVER 649


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 628 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDSHIFFLIA 485
           +IAQRV  +AG+  +    +    V  LP F    V C+D+   F +A
Sbjct: 432 SIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDATAIFDVA 479


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 186  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 40
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,672
Number of Sequences: 28952
Number of extensions: 347668
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)