Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10542X
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 104 1e-23
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 27 2.0
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 2.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.5
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 6.0
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 7.9
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 7.9
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 104 bits (249), Expect = 1e-23
Identities = 47/80 (58%), Positives = 55/80 (68%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
V M+WEG VKTGR MLGA+NP DS PGTIRGD I +GRN+ HGSDS+ESA +EI L
Sbjct: 72 VCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKL 131
Query: 436 WFTDKEVVGWTPANENWAYE 495
WF E+ + E W YE
Sbjct: 132 WFQPSEIQVYDRTIEPWIYE 151
Score = 30.7 bits (66), Expect = 0.16
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 176 ELLQQHYSDLASRPFFPGLVKYMSSG--LWSLWYGR 277
+L+++HY++ +PF+ LV +M+SG +W G+
Sbjct: 45 DLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGK 80
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 83 IFSLTSILLCFFSSITSSNSTGFTWCRIRHEELLQQHYSDLASRPFFPGLVKYMSSGL-W 259
I SL I+ F + SS + WCRIRH+ L + L+ Y+ S + W
Sbjct: 287 IISLLIIIAGLF--LISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTRDLISYIESPISW 344
Query: 260 SLWY 271
+L Y
Sbjct: 345 NLKY 348
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -3
Query: 456 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 280
N FV P R + RT+ TP+L E ++ R+S V C H +S N
Sbjct: 5 NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62
Query: 279 ALPYHRDHS-PELMYF 235
++ R H +L+++
Sbjct: 63 SVRNTRTHKFKQLLHY 78
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 44 ELSITILGKTGRSIFSLTSILLCFFSSITSSNSTGFTWCRIRHEELLQ 187
++ I L K+ +FS T+ L+C F +T + ++RH LQ
Sbjct: 621 KVMIASLIKSAYPMFSRTNQLICLFYCLTGNEEATIQLIQMRHIFKLQ 668
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 277 GLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 393
GL +++ G ++ T+P+ GT+ GD C+++G NI+H
Sbjct: 364 GLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 32 STFSELSITILGKTGRSIFSLTSILLCFFSSIT 130
+T++ S T++ K ++ +T+ILLCFF++ T
Sbjct: 9 TTWNPHSCTVVEKCITNLL-ITTILLCFFNATT 40
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 259 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 426
+ V EG N + GRQ+L T+P + + +G I H SD + + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447
Query: 427 IGLWFTDKEV 456
F+ E+
Sbjct: 448 SAFGFSAMEL 457
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 436 WFTDKEVVGWTPAN-ENWAY 492
WF DK + GW+ N + +AY
Sbjct: 512 WFGDKAISGWSNTNYDTYAY 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,526
Number of Sequences: 5004
Number of extensions: 45111
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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