Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10542X
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 111 5e-25
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 107 8e-24
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 99 2e-21
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 99 2e-21
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 8.1
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 27 8.1
06_01_0114 - 892599-893070,894115-894457,894896-895151 27 8.1
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 111 bits (266), Expect = 5e-25
Identities = 48/79 (60%), Positives = 60/79 (75%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
V+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNIIHGSD E+AK EIGL
Sbjct: 114 VLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKAEIGL 173
Query: 436 WFTDKEVVGWTPANENWAY 492
WF +E+V +T E W Y
Sbjct: 174 WFEPRELVSYTSNEEKWIY 192
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 173 EELLQQHYSDLASRPFFPGLVKYMSSG--LWSLWYGRALM 286
+E Q+HY DL RPFF GL ++SSG L +W G ++
Sbjct: 86 KEFAQKHYHDLKDRPFFNGLCDFLSSGPVLAMVWEGEGVI 125
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 107 bits (256), Expect = 8e-24
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
VV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDSVE+A+KEI L
Sbjct: 72 VVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVENARKEIAL 131
Query: 436 WFTDKEVVGWTPANENWAYE 495
WF + + W W YE
Sbjct: 132 WFPE-GIAEWRSNQHPWIYE 150
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Frame = +2
Query: 185 QQHYSDLASRPFFPGLVKYMSSG--LWSLWYGRALM 286
++HY+DL+S+PFF GLV+Y+ SG + +W G+ ++
Sbjct: 48 EKHYADLSSKPFFGGLVEYIVSGPVVAMVWEGKQVV 83
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 99.1 bits (236), Expect = 2e-21
Identities = 41/80 (51%), Positives = 55/80 (68%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
VV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSDS ++ K+EI L
Sbjct: 71 VVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIAL 130
Query: 436 WFTDKEVVGWTPANENWAYE 495
WF + E+ W W E
Sbjct: 131 WFKEGELCEWESVLTPWLVE 150
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +2
Query: 173 EELLQQHYSDLASRPFFPGLVKYMSSG--LWSLWYGRALM 286
++L Q+HY DL +PFFPGL++Y++SG + W G ++
Sbjct: 43 KDLAQEHYKDLKEKPFFPGLIEYITSGPVVCMAWEGNGVV 82
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/80 (55%), Positives = 57/80 (71%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
VV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSDSV++ KKEI L
Sbjct: 70 VVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIAL 129
Query: 436 WFTDKEVVGWTPANENWAYE 495
WF + + W W YE
Sbjct: 130 WFPE-GLAEWRSNLHPWIYE 148
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/33 (54%), Positives = 26/33 (78%), Gaps = 2/33 (6%)
Frame = +2
Query: 185 QQHYSDLASRPFFPGLVKYMSSG--LWSLWYGR 277
QQHY+DL+ +PFFPGLV+Y+ SG + +W G+
Sbjct: 46 QQHYADLSDKPFFPGLVEYIISGPVVAMVWEGK 78
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 405 AVRTMDDVTPNL-NAEITADSAGLRVSWVSCAKHLTASLHNIKAL 274
A+R+ +T L NA IT ++ G S VSC HL+ S +++ +
Sbjct: 2086 ALRSTQMITTVLPNANITPNNLGTLDSAVSCFLHLSESASSVETI 2130
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 465 PAHNFFVRKPEAYFLFSRFNAVRTMDD-VTPNLNAEITADSAGLRVSWVSCAKHLTASLH 289
P F + E + ++ RFN T+DD + P+L S GL + A +LH
Sbjct: 217 PPSGVFAKLRELHLVYVRFNGELTLDDAMLPSLEWLDIGKSRGLASLTLRLAPLTLMALH 276
Query: 288 NIKAL 274
+++ L
Sbjct: 277 DMRWL 281
>06_01_0114 - 892599-893070,894115-894457,894896-895151
Length = 356
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 303 TASLHNIKALP-YHRDHSPELMYFTRPGKK 217
T S N A P YH H P L Y+ GKK
Sbjct: 66 TYSFANPAAAPFYHHHHHPSLSYYAYYGKK 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,053
Number of Sequences: 37544
Number of extensions: 284629
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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