Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10542X
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43840| Best HMM Match : NDK (HMM E-Value=0) 123 9e-29
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3) 29 2.7
SB_37689| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 28 4.8
SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
Length = 786
Score = 123 bits (297), Expect = 9e-29
Identities = 55/80 (68%), Positives = 61/80 (76%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
V MVWEGL VVKT R MLG T+PA S PGTIRGD I +GRNIIHGSD+VE+AK+EI L
Sbjct: 707 VCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVETAKEEIAL 766
Query: 436 WFTDKEVVGWTPANENWAYE 495
WF D E+V WTP N W YE
Sbjct: 767 WFKDDELVDWTPCNNPWMYE 786
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +2
Query: 173 EELLQQHYSDLASRPFFPGLVKYMSSG 253
EE L++HY+DLA PF+PGLVK+MSSG
Sbjct: 167 EEHLKKHYADLAHLPFYPGLVKFMSSG 193
Score = 34.3 bits (75), Expect = 0.072
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 328 ADSQPGTIRGDLCIQVG 378
ADS+PGTIRGD C+ +G
Sbjct: 199 ADSKPGTIRGDFCVHIG 215
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 167 RHEELLQQHYSDLASRPFFPGLVKYMS 247
+ E+ ++HY LA F+ GL KYMS
Sbjct: 677 KSEDHFRKHYESLAKLKFYDGLCKYMS 703
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 265 MVWEGLNVVKTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
MV + V R ++G +P ++ P +IR L V +N++HG E A K I
Sbjct: 743 MVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPSDPEKAGKVIKE 802
Query: 436 WFTDKEVV 459
+F + +++
Sbjct: 803 FFPEAKIL 810
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 283 NVVKTGRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIHGSDSVESAKKEIGLWFTDK 450
+ ++ R MLG D P ++R ++ N +HGSD+ E+A+KEI +F +
Sbjct: 614 DAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLHGSDTAENAEKEIQKFFPMQ 673
Query: 451 EVV 459
V
Sbjct: 674 STV 676
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 382 NIIHGSDSVESAKKEIGLWFTD 447
N +HG DS ESA +E+ +F D
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522
>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 455 LWAGHLQMKTGLMSKFILSVYFVLFS*FMLNIL 553
LW GHL++ G +LS + +L F+LN+L
Sbjct: 296 LWRGHLKVIQGKFGSGVLSYFVLLRWLFLLNVL 328
>SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3)
Length = 294
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 209 SRPFFPGLVKYMSSGLWSLWYGRAL 283
+ P PG+ K++ SG W +W G +
Sbjct: 200 NNPILPGVPKFLISGGWPMWCGNEI 224
>SB_37689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 159 HQVKPVEFDEVIEEKKHKRIEVKEKIDRPVLPKIVIDNSENVEQ 28
H+ ++FD + EK + R+ +I +PV+P +++ E+
Sbjct: 201 HKKASIDFDNLQGEKSYGRLAAYSRIGKPVVPAALMNRPTRGER 244
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 339 LRVSWVSCAKHLTASL--HNIKALPYHRDHSPELMYFTRPGKKGRDAKSL 196
LRVSW S H ASL H +L H SP+ P G+ SL
Sbjct: 226 LRVSWASLKSHGAASLKSHEAASLKSHVAASPKSHGAASPSLMGQHFSSL 275
>SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 44 ELSITILGKTGRSIFSLTSILLCFFSSITSSNSTGFTWCRIRHEELLQQHYSDLASR 214
E +T+ K R+ + S+ C SS++ + R RH LL HYS L +R
Sbjct: 43 EYQLTLRNK--RNTWVNKSLSGCPLSSLSLVTRLPLSVTRYRHSPLLVNHYSQLVNR 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,627,447
Number of Sequences: 59808
Number of extensions: 335918
Number of successful extensions: 920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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