Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10542X
(575 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.18
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 25 0.54
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 25 0.54
AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase prec... 25 0.54
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 5.0
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 5.0
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 5.0
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 6.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 6.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 6.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.6
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 8.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 26.6 bits (56), Expect = 0.18
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 119 SSITSSNSTGFTWCRIRHEELLQQHYSDLASRPFFPGLVKYMSSGLWSLW 268
S+I S GFT + + LL++HYS + S + + M+ L +LW
Sbjct: 218 STIDSKFGLGFTTDLLSYNILLRRHYS-MNSTTYVTLTIVLMTMTLMTLW 266
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 25.0 bits (52), Expect = 0.54
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 564 SFNHRMFNINYENKTKYTDKINLLISPV 481
++N++ +N NY +K Y + IN+ PV
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQIPV 335
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.0 bits (52), Expect = 0.54
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 564 SFNHRMFNINYENKTKYTDKINLLISPV 481
++N++ +N NY +K Y + IN+ PV
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQIPV 346
>AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase
precursor protein.
Length = 156
Score = 25.0 bits (52), Expect = 0.54
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 64 GQDRPINFLFNFYSFMFLLFNNFIKFNRF 150
G++ P F+FL FN+ ++F RF
Sbjct: 8 GKNFPSTSFILINYFIFLYFNSLVRFRRF 36
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 200 DLASRPFFPGLVKYMSSGLWSLWYGR 277
D+ SR FFP + + + WS + R
Sbjct: 416 DVISRIFFPIVFAFFNLAYWSTYLFR 441
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 200 DLASRPFFPGLVKYMSSGLWSLWYGR 277
D+ SR FFP + + + WS + R
Sbjct: 416 DVISRIFFPIVFAFFNLAYWSTYLFR 441
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.8 bits (44), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 410 NLLKRK*ASGLRTKKLWAGHLQMKTGLMSKFILSVY 517
NLL+ +S K A LQ + G + F+LS +
Sbjct: 21 NLLRTSFSSAKLEKLYRASSLQQRRGGLEYFLLSAF 56
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.4 bits (43), Expect = 6.6
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = -1
Query: 446 SVNQRPISFLADSTLSEPW 390
S+N+ ++++AD L++ W
Sbjct: 43 SINEESMTYVADIFLAQSW 61
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +1
Query: 106 FMFLLFNNFIKFNRFYLVPNSAR 174
++FL+FN F F+ + + ++ R
Sbjct: 181 YIFLIFNQFQDFSESFQILHAGR 203
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +1
Query: 106 FMFLLFNNFIKFNRFYLVPNSAR 174
++FL+FN F F+ + + ++ R
Sbjct: 181 YIFLIFNQFQDFSESFQILHAGR 203
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +1
Query: 106 FMFLLFNNFIKFNRFYLVPNSAR 174
++FL+FN F F+ + + ++ R
Sbjct: 181 YIFLIFNQFQDFSESFQILHAGR 203
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.0 bits (42), Expect = 8.7
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +1
Query: 277 GLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRN 384
G +V +G+Q G +QP T++ + + +N
Sbjct: 920 GSGIVASGQQHAGGWQSIYAQPQTVQDQIVSEYYQN 955
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,659
Number of Sequences: 438
Number of extensions: 2999
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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