Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10539
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    31   0.17 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.7  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   4.7  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   6.2  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   6.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.2  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = -3

Query: 252 VRLTANIIAGHLLITLL-----RRTGTN-ISFYXXXXXXXXXXXXXXLESAVAIIQSYVI 91
           +RL ANIIAGHL +++L        G N I+F               LE  +A IQ+YV 
Sbjct: 183 IRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFLPITVLVAISLLEFGIAFIQAYVF 242

Query: 90  TIL 82
            IL
Sbjct: 243 AIL 245


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 579 CPKCGKSVYAAXERVAGGLKWHKMCFQ 659
           C KC +SV +  +   GG  WH  CF+
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFK 50


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 607 PLRSAWLVASNGTKCASKCGLCQKLLDS 690
           P+R+ +L+A NGT    K  L  K L S
Sbjct: 514 PIRALYLIAKNGTPTLKKPNLVSKNLKS 541


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +1

Query: 568 ITRSARNVANQFTPLRSAWLVASNGTKCASKCGLCQKLLDSTN--CS---EHEGE 717
           +  SAR V N F P    +     G +C +  G    L+  TN  CS   EH GE
Sbjct: 208 LVESARGVLNPFIPDVFIYTDVRRGDECGNSPGYSITLVAETNKGCSYAAEHCGE 262


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 543 STMP--FKPADNPKCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
           ST P  ++      C  CG S+ A     A G K H  CF+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFK 284


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 579 CPKCGKSVYAAXERVA-GGLKWHKMCF 656
           C +CG++       ++ GG  WHK CF
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCF 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,814
Number of Sequences: 5004
Number of extensions: 38624
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)