Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10539
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 34 0.13
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 29 2.8
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 3.7
07_03_1150 - 24375859-24376050,24376173-24376283,24376488-243766... 29 3.7
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 29 3.7
11_01_0380 + 2887962-2888684 29 4.9
03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284 29 4.9
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 28 6.5
11_08_0026 + 27752519-27755441,27755538-27755923 28 8.6
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC CG++VY E A G +H+ CF+
Sbjct: 12 KCDSCGRTVYPVEELAADGRVYHRPCFR 39
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G +HK CF+
Sbjct: 111 KCVVCNKTVYPLEKVNLNGSSYHKSCFR 138
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+V+ A G+ +HK CF+
Sbjct: 9 KCKACDKTVHFIDLLTADGVSYHKTCFK 36
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G +HK CF+
Sbjct: 105 KCAACQKTVYPLEKLTLEGESYHKSCFK 132
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + A +HK CF+
Sbjct: 11 KCMACDKTVYLVDKLTADNRVYHKACFR 38
>07_03_1150 -
24375859-24376050,24376173-24376283,24376488-24376655,
24376850-24377451,24377546-24377648,24378461-24378610,
24379918-24379956
Length = 454
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 634 SNGTKCAS-KCGLCQKLLDSTNCS 702
++GT C S CG C LL+ +NCS
Sbjct: 398 NHGTVCRSCSCGFCAMLLELSNCS 421
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+V+ A G+ +HK CF+
Sbjct: 9 KCTACDKTVHFIDLLTADGVPYHKTCFK 36
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G +HK CF+
Sbjct: 104 KCAACQKTVYPLEKLTLEGESYHKSCFK 131
>11_01_0380 + 2887962-2888684
Length = 240
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 514 PTRRTG*VKRAQCLSNPLITRSARNVANQFTPLRSAWLVASNGTKCASKCGLCQKLLDST 693
P ++TG A+C + I AR +A S LV G +SK L K
Sbjct: 138 PFKKTGSKATAECCNLVRIMAEAREMAVSLLDTTSGLLVKKIGAPSSSKWSLVSKRFQKK 197
Query: 694 N--CSEHE 711
N C E +
Sbjct: 198 NVVCDEEQ 205
>03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284
Length = 397
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 688 SPAIFGTD---HIWKHILCHLRPPATR 617
SP++ G+D HI KH LC L PP R
Sbjct: 339 SPSLMGSDIFKHIKKHNLCQLIPPNKR 365
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G+ +H+ CF+
Sbjct: 8 KCKVCTKTVYPMDQLSTDGVVFHRSCFK 35
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+ Y + G +HK CF+
Sbjct: 107 KCATCSKTAYPLEKVTVEGQAYHKSCFK 134
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -3
Query: 321 LYFNTIYSNY--*NHQKYYSTWNFTVRLTA---NIIAGHLLITLLRRTG 190
LYF +IYSNY N Y + T+RL + N +AG L T+ TG
Sbjct: 449 LYFLSIYSNYLTGNLPNYVGNLSSTLRLFSLHGNKLAGELPTTISNLTG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,112
Number of Sequences: 37544
Number of extensions: 244928
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -