Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10539
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)                   46   4e-05
SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)                    42   5e-04
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    40   0.002
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)                   38   0.008
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)                     28   8.8  

>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
          Length = 85

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +3

Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMC 653
           KCP+C K+VY A ER+A G KWHK C
Sbjct: 9   KCPRCSKTVYKAEERLAIGKKWHKSC 34


>SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)
          Length = 56

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 549 MPFKPADNPKCPKCGKSVYAAXERVAGGLKWHKMCF 656
           M  K    PKCPKC K+VY+A  +   G+ +HK CF
Sbjct: 2   MSSKYGGGPKCPKCDKTVYSAEGQALLGMTFHKRCF 37


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 579 CPKCGKSVYAAXERVAGGLKWHKMCFQMWSVPK 677
           CP+C K  YAA + +  G  WHK CF  +   K
Sbjct: 218 CPRCEKRAYAAEQVLGAGFNWHKSCFNCYKCHK 250



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 564 ADN-PKCPKCGKSVYAAXERVAGGLKWHKMCF 656
           ADN PKCP+CG +VY A E      K+HK CF
Sbjct: 38  ADNMPKCPRCGDNVYHAEEVSMENHKFHKKCF 69



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCF 656
           +C +C K  Y A      G +WHK CF
Sbjct: 296 RCGRCDKMCYHAEGISMAGKRWHKSCF 322



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 646 KCASKCGLCQKLLDSTNCSEHEGE 717
           KC S C  C+K LDSTN + H+G+
Sbjct: 67  KCFS-CKDCRKKLDSTNAASHDGK 89


>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
          Length = 197

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMC 653
           KCP+C K VY A +  A G  WHK C
Sbjct: 4   KCPRCEKPVYFAEQAKANGKSWHKPC 29


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 552 PFKPADNPKCPKCGKSVYAAXERVAGGLKWHKMCFQMWSVPKIA 683
           P   +D+ KCP CGK        +A   +W    ++ W + + A
Sbjct: 389 PVSSSDDEKCPTCGKDNTHLKRHMARKHRWSAKRYEKWLLKRTA 432


>SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)
          Length = 223

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 436 LVLVKIYGNLGITALNCTRVRELDFVPTRRTG*VKRAQCLSNPLITRSARNVANQ 600
           L LV++Y +L  +++N  R++ +D    +       A+ L +PL T+ + + AN+
Sbjct: 20  LALVRVYLDLVFSSINYRRLKSIDLEQLK-------AEILQSPLCTKDSPSTANE 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,461,826
Number of Sequences: 59808
Number of extensions: 298688
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)