Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10539
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   3.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.9  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 185 LVPVLLNNVINKCPAIMLAVNRTV 256
           L+P +LNN  N+C +  + +  T+
Sbjct: 56  LLPEVLNNHCNRCTSRQIGIANTL 79


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 333 TRNTLYFNTIYSNY*NHQKYYS 268
           +  T++ N  Y+NY N + YY+
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYN 329


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 363 YKSHIYSYNSTRNTLYFNTIYSNY*NHQK--YYSTWN 259
           + ++ Y YN   N    N   +NY N+ K  YY+  N
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 372 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 271
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 372 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 271
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 345 SYNSTRNTLYFNTIYSNY 292
           S+  T N  YF+  Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 586 NVANQFTPLRSAWLVASNGTKCASKCGLCQKLLDSTN 696
           N A  + P     LVA +  +C S+ G  Q  +D  +
Sbjct: 24  NAAPDWVPPEVFDLVAEDKARCMSEHGTTQAQIDDVD 60


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 586 NVANQFTPLRSAWLVASNGTKCASKCGLCQKLLDSTN 696
           N A  + P     LVA +  +C S+ G  Q  +D  +
Sbjct: 24  NAAPDWVPPEVFDLVAEDKARCMSEHGTTQAQIDDVD 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,932
Number of Sequences: 438
Number of extensions: 2833
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)