Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10539
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 32 0.33
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 31 0.77
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 30 1.3
At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A... 30 1.3
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 29 3.1
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 29 3.1
At3g59360.2 68416.m06620 nucleotide-sugar transporter family pro... 29 4.1
At3g59360.1 68416.m06619 nucleotide-sugar transporter family pro... 29 4.1
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 4.1
At2g03360.1 68415.m00295 hypothetical protein contains Pfam doma... 29 4.1
At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi... 27 9.5
At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi... 27 9.5
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi... 27 9.5
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VYA A G+ +HK CF+
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFK 36
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + +HK CF+
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFK 134
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY A G+ +HK CF+
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFK 36
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY G+ +HK CF+
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFR 37
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G +HK CF+
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFR 133
>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
ATPase subunit 6 GI:515963 from [Raphanus sativus];
contains Pfam profile: PF00119 ATP synthase, A subunit
Length = 385
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = -3
Query: 252 VRLTANIIAGHLLITLLRRTG-----TNISFYXXXXXXXXXXXXXXL--ESAVAIIQSYV 94
+RL AN++AGH L+ +L N FY E VAI+Q+YV
Sbjct: 310 IRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYV 369
Query: 93 ITILRTLYYSE 61
TIL +Y ++
Sbjct: 370 FTILICIYLND 380
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + A +HK CF+
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFR 36
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G +HK CF+
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFK 136
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY G+ +HK CF+
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFR 36
>At3g59360.2 68416.m06620 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 203 NNVINKCPAIMLAVNRTVKFQVE*YF 280
NNV+ PA++ A+N +KF ++ YF
Sbjct: 118 NNVLLAVPALLYAINNYLKFTMQLYF 143
>At3g59360.1 68416.m06619 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 203 NNVINKCPAIMLAVNRTVKFQVE*YF 280
NNV+ PA++ A+N +KF ++ YF
Sbjct: 118 NNVLLAVPALLYAINNYLKFTMQLYF 143
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY + G +HK CF+
Sbjct: 105 KCATCKKTVYPLEKVTMEGESYHKTCFR 132
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 576 KCPKCGKSVYAAXERVAGGLKWHKMCFQ 659
KC C K+VY G +HK CF+
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFR 36
>At2g03360.1 68415.m00295 hypothetical protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 393
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 388 NLSHRGIDKDKDIVKC----LVLVKIYGNLGITALNCTRVREL 504
NL + ++ + I+K L+LV+ YGN+G LN +RE+
Sbjct: 198 NLLDKALNPNLSIIKINKPRLILVRRYGNIGRVILNEEEIREM 240
>At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 766
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 707 CSEQLVESSNFWHRPHLEAHFVPFEATSHALLSGV 603
CS VE + +W+ LEA P +AL+SG+
Sbjct: 487 CSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGL 521
>At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 727
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 707 CSEQLVESSNFWHRPHLEAHFVPFEATSHALLSGV 603
CS VE + +W+ LEA P +AL+SG+
Sbjct: 487 CSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGL 521
>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 766
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 707 CSEQLVESSNFWHRPHLEAHFVPFEATSHALLSGV 603
CS VE + +W+ LEA P +AL+SG+
Sbjct: 487 CSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGL 521
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,597
Number of Sequences: 28952
Number of extensions: 201038
Number of successful extensions: 531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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