Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10538
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 134 1e-32
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 134 1e-32
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 134 1e-32
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.31
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.96
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 134 bits (324), Expect = 1e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +T
Sbjct: 86 FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
RVKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVAG 170
Score = 128 bits (310), Expect = 6e-31
Identities = 53/69 (76%), Positives = 63/69 (91%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAP 230
Query: 689 GRKVGLIAA 715
G+KVGLIAA
Sbjct: 231 GQKVGLIAA 239
Score = 117 bits (281), Expect = 2e-27
Identities = 54/80 (67%), Positives = 67/80 (83%)
Frame = +2
Query: 2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
GRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V
Sbjct: 2 GRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKV 60
Query: 182 HFRDPYKFKTRKELFIAPEG 241
FR+PY ++T E F+A EG
Sbjct: 61 AFRNPYHYRTDVETFVATEG 80
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 134 bits (324), Expect = 1e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +T
Sbjct: 86 FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
RVKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVAG 170
Score = 128 bits (310), Expect = 6e-31
Identities = 53/69 (76%), Positives = 63/69 (91%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAP 230
Query: 689 GRKVGLIAA 715
G+KVGLIAA
Sbjct: 231 GQKVGLIAA 239
Score = 117 bits (281), Expect = 2e-27
Identities = 54/80 (67%), Positives = 67/80 (83%)
Frame = +2
Query: 2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
GRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V
Sbjct: 2 GRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKV 60
Query: 182 HFRDPYKFKTRKELFIAPEG 241
FR+PY ++T E F+A EG
Sbjct: 61 AFRNPYHYRTDVETFVATEG 80
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 134 bits (324), Expect = 1e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +T
Sbjct: 86 FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
RVKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVAG 170
Score = 128 bits (310), Expect = 6e-31
Identities = 53/69 (76%), Positives = 63/69 (91%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAP 230
Query: 689 GRKVGLIAA 715
G+KVGLIAA
Sbjct: 231 GQKVGLIAA 239
Score = 117 bits (281), Expect = 2e-27
Identities = 54/80 (67%), Positives = 67/80 (83%)
Frame = +2
Query: 2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
GRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V
Sbjct: 2 GRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKV 60
Query: 182 HFRDPYKFKTRKELFIAPEG 241
FR+PY ++T E F+A EG
Sbjct: 61 AFRNPYHYRTDVETFVATEG 80
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 584 PYVRGVAMNPVEHPHGGGNHQHIG 655
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 508 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 338
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 0.96
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 529 RFVNTSTPATIPTM-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 389
RF+N +T ++ PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 518 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 610
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 367 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 269
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,649
Number of Sequences: 5004
Number of extensions: 74045
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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