Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10538
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      130   1e-30
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823...    30   2.3  
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    29   4.0  
02_04_0503 + 23526699-23527112                                         29   5.3  
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656...    29   5.3  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    28   7.1  
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    28   9.3  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  130 bits (314), Expect = 1e-30
 Identities = 56/69 (81%), Positives = 61/69 (88%)
 Frame = +2

Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
           GGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 231

Query: 689 GRKVGLIAA 715
           G+KVGLIAA
Sbjct: 232 GQKVGLIAA 240



 Score =  126 bits (305), Expect = 1e-29
 Identities = 58/80 (72%), Positives = 67/80 (83%)
 Frame = +2

Query: 2   GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
           GRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V
Sbjct: 2   GRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKV 61

Query: 182 HFRDPYKFKTRKELFIAPEG 241
            FR P+++K +KELF+A EG
Sbjct: 62  TFRHPFRYKHQKELFVAAEG 81



 Score =  125 bits (301), Expect = 4e-29
 Identities = 53/85 (62%), Positives = 70/85 (82%)
 Frame = +3

Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
           FVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG  ARASG++A VI HNPD   +
Sbjct: 87  FVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTS 146

Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
           R+KLPSGAKK++PSS R M+G VAG
Sbjct: 147 RIKLPSGAKKIVPSSCRAMIGQVAG 171


>12_02_0917 +
           24281029-24281137,24281998-24282095,24282196-24282372,
           24282490-24282590,24282684-24282759,24282843-24282902,
           24282999-24283195,24283296-24283392,24283478-24283564,
           24283925-24283983,24284535-24284626,24284706-24284783,
           24284891-24285051,24285303-24285530
          Length = 539

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 522 SIRPPQQQYRPCLCCLMAEPSWLQTVAL 439
           ++ PP +Q+     C+ + PSW+Q  AL
Sbjct: 15  AVFPPHEQFHHLAYCVHSNPSWVQVAAL 42


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 511 WTY*QTYFESWKGIPQVQG 567
           WTY  T+F SW  +P +QG
Sbjct: 72  WTYWSTFFLSWSIVPTLQG 90


>02_04_0503 + 23526699-23527112
          Length = 137

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 458 QEGSAIKQQRHGRYCCWGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 637
           +EG  ++  +H R+C  G      +   GR   + K+   C P     A +P  HP GGG
Sbjct: 61  EEGPKLEHDKHERHCMAGSAATSNLGSEGRGGKRPKILVVCSPQ----APSP-PHPVGGG 115


>01_01_0841 -
           6564029-6564348,6564654-6564686,6564793-6565450,
           6565530-6565694,6565789-6565878,6565982-6566182,
           6566525-6566737,6566835-6567077
          Length = 640

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 596 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 703
           G+A N    PHG  NHQH       ++ T++  K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 414 CVQSPWRSFQRHVPDDLYHPFSLQDCTQWY 325
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 757 LCIGLASTNPSGPASSNKTNFA-TSRCSSLDSGSLTYMLMVTTTVRMLYRVHG 602
           L + +A  + SG   +N  +FA TS CSSL   S TY+L+     +    V+G
Sbjct: 305 LLVNVAIVSISGTICANNLSFADTSTCSSLTLNS-TYVLLKNILGKSSSTVYG 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,049,931
Number of Sequences: 37544
Number of extensions: 540028
Number of successful extensions: 1551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)