Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10538
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 3e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 131 7e-31
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 42 4e-04
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 33 0.33
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30) 29 5.5
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 142 bits (344), Expect = 3e-34
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
F+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRT
Sbjct: 87 FIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRT 146
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
RVKLPSG KKV+PSSNR +VGIVAG
Sbjct: 147 RVKLPSGIKKVIPSSNRALVGIVAG 171
Score = 141 bits (342), Expect = 5e-34
Identities = 65/80 (81%), Positives = 70/80 (87%)
Frame = +2
Query: 2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
GRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAVV
Sbjct: 2 GRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVV 61
Query: 182 HFRDPYKFKTRKELFIAPEG 241
FRDPY++K RKELF+A EG
Sbjct: 62 VFRDPYRYKLRKELFVATEG 81
Score = 139 bits (336), Expect = 3e-33
Identities = 61/69 (88%), Positives = 63/69 (91%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG STV+R T A
Sbjct: 172 GGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPA 231
Query: 689 GRKVGLIAA 715
GRKVGLIAA
Sbjct: 232 GRKVGLIAA 240
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 131 bits (316), Expect = 7e-31
Identities = 57/79 (72%), Positives = 68/79 (86%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
F+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRT
Sbjct: 45 FIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRT 104
Query: 435 RVKLPSGAKKVLPSSNRGM 491
RVKLPSG KKV+PSSNR +
Sbjct: 105 RVKLPSGIKKVIPSSNRAL 123
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +2
Query: 125 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 241
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +3
Query: 276 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 455
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 456 AKKVLPSSNRGMVGIVAGVD 515
+K + S VG V+ ++
Sbjct: 168 VEKEVSSKCLASVGRVSNIE 187
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 32.7 bits (71), Expect = 0.33
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 571 FDLVLVVCPSSFQNRFVNTS-TPATIPT-MPLLLDGRTFLAPDGSFT 437
F L V PSS QN F + PA T + L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 753 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 628
V VL P + P+LR +RP LRP P+L L W PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 372 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 500
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)
Length = 474
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -1
Query: 342 DCTQWYPQA*LQQASHFQLQELLSFHNKQMACVEPSGAMKSSFLVLNL----YGSRKCTT 175
D T+W + + +Q+ FH + + E G+M+S+ ++ + +G KCT
Sbjct: 258 DTTKW-----TRNGTEASVQQSQRFHTRDLYSYE--GSMESTLIIKGVRIQDFGCYKCTV 310
Query: 174 AKGAPLPGSWIISL 133
A L SW+ L
Sbjct: 311 ATSNGLGSSWVCLL 324
>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 747 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 628
+L P + P+LR +RP LRP P+L + W PP
Sbjct: 1 MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 708 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 547
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,092,951
Number of Sequences: 59808
Number of extensions: 604988
Number of successful extensions: 1499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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