Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10538
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   135   3e-32
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    39   0.003
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    31   0.89 
U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    31   1.2  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    31   1.2  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    31   1.2  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    31   1.2  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    31   1.2  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    29   4.8  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    29   4.8  
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   8.3  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  135 bits (327), Expect = 3e-32
 Identities = 55/85 (64%), Positives = 73/85 (85%)
 Frame = +3

Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
           F++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATVI HNPD K+T
Sbjct: 87  FIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKT 146

Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
           R++LPSGAKKV+ S NR M+G+VAG
Sbjct: 147 RIRLPSGAKKVVQSVNRAMIGLVAG 171



 Score =  132 bits (319), Expect = 3e-31
 Identities = 60/80 (75%), Positives = 66/80 (82%)
 Frame = +2

Query: 2   GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
           GR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++
Sbjct: 2   GRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAII 61

Query: 182 HFRDPYKFKTRKELFIAPEG 241
            FRDPYK+KT K   +A EG
Sbjct: 62  AFRDPYKYKTVKTTVVAAEG 81



 Score =  131 bits (316), Expect = 6e-31
 Identities = 57/69 (82%), Positives = 61/69 (88%)
 Frame = +2

Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
           GGR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG  STV+R  SA
Sbjct: 172 GGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASA 231

Query: 689 GRKVGLIAA 715
           G+KVGLIAA
Sbjct: 232 GKKVGLIAA 240


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +3

Query: 291 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 467
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP   +  
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217

Query: 468 LPSSNRGMVGIVAGVDVLTNLF*KLEGH 551
           L  +    VG ++  D+   +F   + H
Sbjct: 218 LHRTCMATVGRLSHADIDGKIFGSAQMH 245


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = -3

Query: 598 TTYIWPAVTFDLVLVVCPSSFQNRFVNTSTPATIPTMPLLLDGRTFLAPDGSFTLVRLAS 419
           T+ +W A T    L   PS  ++    ++T A +PT        TF AP  S        
Sbjct: 223 TSSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPT----TTSTTFAAPQASTEPSEATE 278

Query: 418 GLCPITVAKFPEARARRPLSPIFSSR-LHTMVPSGIAPTGITFPTSRVA 275
            L   T A  P   + R ++ I  +R L +   + +  T     T+R+A
Sbjct: 279 ALATATPADLPTKPSGREITTITGTRKLSSTSTTKLPKTASKTSTARLA 327


>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 CCWGGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 619
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 CCWGGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 619
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 283 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 323


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 CCWGGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 619
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 289 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 329


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 CCWGGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 619
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 CCWGGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 619
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 301 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 341


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 589 IWPAVTFDLVLVVCPSSF-QNRFVNTSTPATIPTMPLL 479
           +WPA  FD       +SF  N   NT TP+T  T P+L
Sbjct: 618 VWPAPNFDRRRKSSETSFTTNTTTNTLTPSTPVTPPVL 655


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 589 IWPAVTFDLVLVVCPSSF-QNRFVNTSTPATIPTMPLL 479
           +WPA  FD       +SF  N   NT TP+T  T P+L
Sbjct: 520 VWPAPNFDRRRKSSETSFTTNTTTNTLTPSTPVTPPVL 557


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
 Frame = -3

Query: 748 GLASTNPSGPASSNKTNFATSRCSSLDSGSLTYML---MVTTTVRMLYRVHGNT-TYIWP 581
           G AS+  +G ASS  T  ATS  ++  S S T +    M ++T + +     N+ T+++ 
Sbjct: 547 GEASSTTTGEASSTTTGEATSVAATTSSASSTVVTSTEMPSSTSQAVCTTQDNSATFLFA 606

Query: 580 -AVTFDLVLVVCPSSFQNRFVNTSTPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPI 404
            A  FD           +R + +   A +PT   L +  T L  +       +A+     
Sbjct: 607 YAADFDPTTY----GLVSRTIGSYVTANLPTGQTLANVLTDLTTEMDIKYTNVANDFTTN 662

Query: 403 TVAKFPEARARR 368
            V   P+A   R
Sbjct: 663 CVTDQPDATLAR 674


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 HGYIKGVVKDIIHDPGRGAPLAVVHFR 190
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 HGYIKGVVKDIIHDPGRGAPLAVVHFR 190
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 2   GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 109
           GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 465 GRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 405 IGHNPDAKRTRVKLPSGAKKVL 470
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 172
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,128
Number of Sequences: 27780
Number of extensions: 436022
Number of successful extensions: 1147
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)