Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10538
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 130 7e-31
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 130 1e-30
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 127 7e-30
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 49 4e-06
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 49 4e-06
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 4e-05
At3g03720.1 68416.m00377 amino acid permease family protein simi... 32 0.36
At2g22730.1 68415.m02694 transporter-related low similarity to s... 31 0.84
At3g61210.1 68416.m06850 embryo-abundant protein-related similar... 30 1.5
At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma mem... 29 2.6
At2g43660.2 68415.m05427 glycosyl hydrolase family protein 17 si... 29 2.6
At2g43660.1 68415.m05426 glycosyl hydrolase family protein 17 si... 29 2.6
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 4.5
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 28 5.9
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote... 28 7.8
At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas... 28 7.8
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e... 28 7.8
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e... 28 7.8
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 130 bits (315), Expect = 7e-31
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 231
Query: 689 GRKVGLIAA 715
G+KVGLIAA
Sbjct: 232 GKKVGLIAA 240
Score = 127 bits (307), Expect = 7e-30
Identities = 59/80 (73%), Positives = 67/80 (83%)
Frame = +2
Query: 2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
GRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V
Sbjct: 2 GRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARV 61
Query: 182 HFRDPYKFKTRKELFIAPEG 241
FR P++FK +KELF+A EG
Sbjct: 62 AFRHPFRFKKQKELFVAAEG 81
Score = 122 bits (294), Expect = 3e-28
Identities = 52/85 (61%), Positives = 69/85 (81%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
F+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD +
Sbjct: 87 FLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTS 146
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
R+KLPSG+KK++PS R M+G VAG
Sbjct: 147 RIKLPSGSKKIVPSGCRAMIGQVAG 171
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 130 bits (314), Expect = 1e-30
Identities = 57/69 (82%), Positives = 59/69 (85%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R SA
Sbjct: 173 GGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSA 232
Query: 689 GRKVGLIAA 715
G KVG IAA
Sbjct: 233 GAKVGQIAA 241
Score = 127 bits (306), Expect = 9e-30
Identities = 54/85 (63%), Positives = 72/85 (84%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP++ T
Sbjct: 88 YLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTT 147
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
RVKLPSG+KK+LPS+ R M+G VAG
Sbjct: 148 RVKLPSGSKKILPSACRAMIGQVAG 172
Score = 120 bits (288), Expect = 1e-27
Identities = 57/81 (70%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 GRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 178
GRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 2 GRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLAR 61
Query: 179 VHFRDPYKFKTRKELFIAPEG 241
V FR P+++ +KELF+A EG
Sbjct: 62 VAFRHPFRYMKQKELFVAAEG 82
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 127 bits (307), Expect = 7e-30
Identities = 59/80 (73%), Positives = 67/80 (83%)
Frame = +2
Query: 2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 181
GRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V
Sbjct: 2 GRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARV 61
Query: 182 HFRDPYKFKTRKELFIAPEG 241
FR P++FK +KELF+A EG
Sbjct: 62 TFRHPFRFKKQKELFVAAEG 81
Score = 127 bits (306), Expect = 9e-30
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = +3
Query: 255 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 434
F+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD+ T
Sbjct: 87 FLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTT 146
Query: 435 RVKLPSGAKKVLPSSNRGMVGIVAG 509
R+KLPSG+KK++PS R M+G VAG
Sbjct: 147 RIKLPSGSKKIVPSGCRAMIGQVAG 171
Score = 126 bits (304), Expect = 2e-29
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +2
Query: 509 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 688
GGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 231
Query: 689 GRKVGLIAA 715
G+KVGLIAA
Sbjct: 232 GQKVGLIAA 240
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +3
Query: 288 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 467
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 468 LPSSNRGMVGIVA 506
+ + R +G V+
Sbjct: 118 INAKCRATIGTVS 130
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +2
Query: 560 YKVKRNCW----PYVRGVAMNPVEHPHGGG 637
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +3
Query: 288 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 467
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 468 LPSSNRGMVGIVA 506
+ + R +G V+
Sbjct: 118 INAKCRATIGTVS 130
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +2
Query: 560 YKVKRNCW----PYVRGVAMNPVEHPHGGG 637
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +2
Query: 557 KYKVKRNCWPYVRGVAM-NPVEHPHGG 634
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At3g03720.1 68416.m00377 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 600
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 129 LLRI*SMTLVEVHLWLLYTSAIHTSSRQGRSSSLLPKALHRPFVYCGKKAT 281
++ I + T + V +WLL S I+ GRS SLL A++ P + C +K T
Sbjct: 548 IINIGAGTWIRVLIWLLIGSMIYIF--YGRSHSLLNNAVYVPTMTCTRKTT 596
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 31.1 bits (67), Expect = 0.84
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = -3
Query: 571 FDLVLVVCP--SSFQNRFVNTSTPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 398
F V ++C + F+ ATIP LL G TFL FT L S I +
Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396
Query: 397 AKFPEARARRPLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 269
E +P+ LH + PS + P + T + F
Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKPS-LRPLSMAISTVAIHIF 438
>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 628 VRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTPATIPTMPLLLDG 470
V+ + R G +W V DL++ S R V+++ P PTM L DG
Sbjct: 125 VKRVLRKQGGIIVVW--VYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDG 175
>At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA9)
identical to SP|Q9LU41 Potential calcium-transporting
ATPase 9, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 9) {Arabidopsis thaliana}
Length = 1086
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +3
Query: 180 YTSAIHTSSRQGRSSSLLPKALHRPFVYCGKKATLEVGN--VMPVGAMPE-GTIVCNLEE 350
++ AI SS G S ++ K PF+ G K VGN V VG E G ++ ++ E
Sbjct: 312 HSLAIDESSMTGESK-IVHKDQKSPFLMSGCKVADGVGNMLVTGVGINTEWGLLMASISE 370
Query: 351 KMGDRGRLARASGNFATVIG 410
G+ L AT IG
Sbjct: 371 DTGEETPLQVRLNGLATFIG 390
>At2g43660.2 68415.m05427 glycosyl hydrolase family protein 17
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]; C terminal homology
only
Length = 123
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 252 ACVEPSGAMKSSFLVLNLYGSRKCTTAKGAPLPGSWIISLTTP 124
AC +P S+ +V+NLY + GS IIS+T P
Sbjct: 70 ACYDPINLYNSASVVMNLYYQNQGRQYSKCDFEGSGIISVTDP 112
>At2g43660.1 68415.m05426 glycosyl hydrolase family protein 17
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]; C terminal homology
only
Length = 122
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 252 ACVEPSGAMKSSFLVLNLYGSRKCTTAKGAPLPGSWIISLTTP 124
AC +P S+ +V+NLY + GS IIS+T P
Sbjct: 69 ACYDPINLYNSASVVMNLYYQNQGRQYSKCDFEGSGIISVTDP 111
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 533 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 694
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 510 PQQQYRPCLCCLMAEPSWLQTV 445
P+Q+ R C+ C EPS++ TV
Sbjct: 3 PEQKQRECIVCREKEPSFIHTV 24
>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
kinase, putative
Length = 691
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 754 CIGLASTNPSGPASSNKTNFAT 689
C GL NP+ P +N TNF T
Sbjct: 258 CTGLNGPNPNRPDPTNPTNFTT 279
>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
identical to SP|Q9SWH5 Galactoside
2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
thaliana}
Length = 558
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 66 GKALLN-FAL*ITLNVMDTSRELLRI*SMTLVEVHLWLLYTSAIHTSSRQ--GRSSSLLP 236
GKAL + L +T N++ ++ + L + W+LY T+ GR+ S+ P
Sbjct: 461 GKALAEMYLLSLTDNLVTSAWSTFGYVAQGLGGLKPWILYRPENRTTPDPSCGRAMSMEP 520
Query: 237 KALHRPFVYCGKKATLEVGNVMP 305
PF C K ++ G ++P
Sbjct: 521 CFHSPPFYDCKAKTGIDTGTLVP 543
>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 377
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -3
Query: 646 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTPATIPTMPLLLDGR 467
+M V +L +W ++ FDLV V+C SSF F++T + P L+D
Sbjct: 37 IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95
Query: 466 TFLAP 452
+ P
Sbjct: 96 CYKPP 100
>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 497
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -3
Query: 646 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTPATIPTMPLLLDGR 467
+M V +L +W ++ FDLV V+C SSF F++T + P L+D
Sbjct: 37 IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95
Query: 466 TFLAP 452
+ P
Sbjct: 96 CYKPP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,967,539
Number of Sequences: 28952
Number of extensions: 411416
Number of successful extensions: 1121
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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