Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10537
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   1.6  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   1.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   3.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.3  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   6.3  

>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 372 LVTRPRLASETVIYY*FLHYLMDVIIHINLPLQSLYLLK 256
           LV   R+ S  ++ Y FL+Y  + II + LPL +L+ ++
Sbjct: 523 LVVSHRIVSNILMTY-FLNYHPEDIIDVGLPLHTLFCIE 560


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 309 LNSGEINNKLQFPKPSEGGSLVIVHIY 389
           L SG ++ KL+FP P+E   + I+ I+
Sbjct: 342 LRSGRLDRKLEFPLPNEEARVGILRIH 368


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 291 INLPLQSLYLLKKPHQNPLRSFKDLSIHRDRESDFVLY 178
           IN+P  SL ++  P Q P + F    I +   SD+ +Y
Sbjct: 283 INIPTDSLSIVSNPSQTPAK-FDSNRISQVPNSDYSIY 319


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 343 NCNLLLISPLFNGCYYTYKPSSSITLSIKKTAS 245
           NC+++L + L N  + + KP  ++ L   K  S
Sbjct: 871 NCSVMLFTALINRAFGSKKPKDAVNLGNNKGLS 903


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -3

Query: 315 YLMDVIIHINLPLQSLYLLKKPHQNPLRSFKDLSIHR-----DRESDFVLYYVVGGFKT 154
           YL +V I + L L+  +L      N   +  DL I R     D++S+FVLY VV   KT
Sbjct: 186 YLTNVFIAVPLNLEKQFL------NSYETLTDLVIPRSAKKLDQDSEFVLYTVVVFKKT 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,608
Number of Sequences: 5004
Number of extensions: 49442
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)