Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10537
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548...    29   2.8  
09_06_0280 + 22010270-22011407,22011890-22013097                       29   3.7  
09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932...    29   3.7  
07_03_0414 + 17892133-17893590                                         28   6.5  
03_02_0688 + 10422337-10422873                                         27   8.6  

>07_01_0718 +
           5484553-5484601,5484836-5484933,5485028-5485078,
           5485744-5485857,5485887-5485937,5485938-5486138,
           5486240-5486341,5486879-5486986,5487053-5487286,
           5488250-5488500,5488592-5488763,5489165-5489320,
           5489405-5489455,5489499-5489591,5489814-5490014,
           5490105-5490236,5490308-5490481,5490755-5490994,
           5491213-5491407
          Length = 890

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = -3

Query: 519 LSPVTTEFSSIF-SN*LSTLHILKVILLKTSTLFFKLSYRT 400
           LSP   EFS+++ S  +S LH+L+VI++ TS+L   ++ +T
Sbjct: 98  LSPSADEFSAVYGSLKVSVLHLLQVIIV-TSSLMKDMNSKT 137


>09_06_0280 + 22010270-22011407,22011890-22013097
          Length = 781

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 448 NIVKDFNIIL*TVLSNTPYGYICTITSDPPSLGFGNCNLLLIS 320
           N+   F   + T  S   +G  C  TS+PP L  GN  L ++S
Sbjct: 48  NVSVPFPFGIRTGCSLEGFGLTCNTTSNPPRLMIGNSTLQVVS 90


>09_02_0431 -
           9327167-9327226,9327347-9327474,9327594-9327709,
           9327816-9327895,9328787-9328912,9329676-9329856,
           9330514-9330578,9330655-9330915
          Length = 338

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 343 NCNLLLISPLFNGCYYTYKP 284
           NCNL++I  LF   Y+ YKP
Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 525 PCLVHGTITLRDHFNSGLL 581
           PC VHG IT   HF +GLL
Sbjct: 16  PCPVHGHITCMLHFATGLL 34


>03_02_0688 + 10422337-10422873
          Length = 178

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 376 ITSDPPSLGFGNCNLLLISP---LFNGCYYTYKPSSSI-TLSIKKTASKSVA 233
           + S P S G G   +L++SP   L  GC+Y   P+SS+    IK+  S S A
Sbjct: 50  VLSRPCSQG-GARRILIVSPESELKRGCFYFLVPASSVPEKKIKRKPSSSSA 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,392
Number of Sequences: 37544
Number of extensions: 284165
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)