Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10537
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5010| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  

>SB_5010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  IDCSYHTSTLQYRRPSIERHHATPFRGYCFEPTHYIV 180
           ++C+   +  +YRRP+ E  H TP      EP   +V
Sbjct: 7   LECTCQVTAYRYRRPTTEDCHKTPRGEATAEPLRSVV 43


>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 59  IKLLSIAPTIHLHYNIDARPSSGTTRH--RSVDIVLNPP 169
           +KL  I  T++ HYNI     + T RH  R++D  L  P
Sbjct: 186 VKLQFIKQTVYEHYNIPTEEKATTWRHCIRAMDEFLRRP 224


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 340 CNLLLISPLFNGCYYTYKP 284
           CN    +P+++GCYY Y P
Sbjct: 527 CNTPPTNPIYDGCYYHYLP 545


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,974
Number of Sequences: 59808
Number of extensions: 342430
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)