Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10537
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At3g51980.1 68416.m05702 expressed protein                             27   7.2  
At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    27   9.5  
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    27   9.5  

>At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 686

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 198 LCPYVCLNL*NYATDFDAVFLIDRVIEEEG 287
           +C ++ ++L      F A  L+DR+IEEEG
Sbjct: 452 VCDFLIVSLCQEGKPFAAKHLLDRIIEEEG 481


>At3g51980.1 68416.m05702 expressed protein
          Length = 382

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 513 GRDHPCLVHGTITLRDHFNSGLLDLK 590
           G+D     HG I LRD  N+G LD+K
Sbjct: 236 GQDLFFAAHGYIMLRDVMNNGSLDMK 261


>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 303 HPLNSGEINN----KLQFPKPSEGGSLVIVHIYP*GVFD 407
           HP  S ++NN    KLQF  PS+ GS  +VH +  G FD
Sbjct: 525 HPNFSTKVNNQRYKKLQFSLPSDAGS-ALVHGFA-GYFD 561


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 303 HPLNSGEINN----KLQFPKPSEGGSLVIVHIYP*GVFD 407
           HP  S ++NN    KLQF  PS+ GS  +VH +  G FD
Sbjct: 525 HPNFSTKVNNQRYKKLQFSLPSDAGS-ALVHGFA-GYFD 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,944
Number of Sequences: 28952
Number of extensions: 241542
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)