Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10535
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.20 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.20 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.9  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +3

Query: 261 ESLVLIIYTPIYSKLFTNTV-TTLPGAVYFLGAAMTVPAFFL--FGTLYK-INKKQ 416
           E++ LII  PIY+ ++T ++  + P  ++FL A +    F +  F  LY+ +N+K+
Sbjct: 589 EAVALIIRGPIYAFVYTESMKVSYPNMIFFLSAVIYGCCFIIIFFMRLYRPLNRKR 644


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 431  DNVTLLFFVDFVEGSE*KESWDCHCCAQK 345
            +N  LL + D    SE K SWD  CCA K
Sbjct: 2389 NNTALLKYHDIPPHSEVKYSWDYPCCANK 2417


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 224 SGSTTLVPNDLVAVTPVVPNKLKTGPE 144
           SGS   VP  L   T  +PN+L  GP+
Sbjct: 11  SGSKEAVPKSLAGSTSNIPNELFVGPD 37


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 445  SSGFWTTSRSCFLLIL*RVPNRKKA 371
            +SG W ++ SC+ +I+ + P  KKA
Sbjct: 1459 NSGTWDSALSCYEIIIQKDPENKKA 1483


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 330 PGAVYFLGAAMTVPAFFLFGTLYKINKKQERDVVQNPELKEMHAHDNQI 476
           PGA Y +        F  FG     N+ +  D ++  ++ E H HDN +
Sbjct: 410 PGANYVIDRESGFKRFLRFG-----NRNRIADDLKIGDIVERHLHDNDV 453


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 491 GLRCCYLIIVGMHF 450
           GL CC LI++ +HF
Sbjct: 150 GLSCCILIVLFLHF 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,092
Number of Sequences: 5004
Number of extensions: 48656
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)