Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10535
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1776 + 29436477-29438240                                         29   3.3  
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589     29   3.3  
02_02_0507 + 11049915-11050024,11050611-11050725                       28   4.4  
12_01_0827 - 7662180-7662192,7662451-7662764                           28   5.8  
06_03_1332 - 29403320-29407804                                         27   7.6  
05_07_0179 + 28195929-28195954,28195966-28196286,28196397-281966...    27   7.6  
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153...    27   7.6  
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313...    27   7.6  

>07_03_1776 + 29436477-29438240
          Length = 587

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 133 AWLFSGPVFNLFGTTGVTA-TRSLGTKVVDPDKV 231
           A+LF+GP+FN + + G +   +     VV PD+V
Sbjct: 302 AYLFAGPIFNDYSSVGYSCLLKKEKAVVVQPDRV 335


>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
          Length = 503

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 79  AATCQTVSSIVYALAPTKAWLFSGPVFNLFGTTGVTA--TRSLGT 207
           AATC T  + + A A T A + S     L  TTGV A  TR+L T
Sbjct: 74  AATCFTAPARLLAAATTAALIASTTACLLAATTGVIASSTRTLAT 118


>02_02_0507 + 11049915-11050024,11050611-11050725
          Length = 74

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 194 GRWVLKSWTRIK*VKSAPSLVSRVSCTDHLHA 289
           GRWV +SWTR      A   +++      LHA
Sbjct: 32  GRWVTRSWTRCGGANGAKGFMNKSEDQAELHA 63


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 404 QQKTGA*RCPKPRTEGNACPR 466
           +Q++    CP+P+  G+ACPR
Sbjct: 47  RQRSDRSACPRPKNGGSACPR 67


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 463  WACISFSSGFWTTSRSCF 410
            W C +F S +++TS SCF
Sbjct: 1272 WGCPTFLSSYYSTSLSCF 1289


>05_07_0179 +
           28195929-28195954,28195966-28196286,28196397-28196664,
           28203206-28203667
          Length = 358

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 411 KQERDVVQNPELKEMHAHDNQITTP 485
           KQ RD+V NP  +++H HD     P
Sbjct: 23  KQWRDIVTNPSFRKLH-HDRHAAPP 46


>05_05_0170 +
           22913791-22914315,22914418-22914581,22914675-22915325,
           22915425-22915542,22915635-22915823,22915948-22916118
          Length = 605

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 133 AWLFSGPVFNLFGTTGVT-ATRSLGTKVVDPDKV 231
           A+LF+GP+FN + + G +   +     +V PD+V
Sbjct: 321 AYLFAGPIFNDYSSVGYSLLLKREKAVIVQPDRV 354


>01_01_0417 -
           3135502-3135672,3135759-3135947,3136037-3136154,
           3136398-3137048,3137146-3137309,3138598-3139098
          Length = 597

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 133 AWLFSGPVFNLFGTTGVT-ATRSLGTKVVDPDKV 231
           A+LF+GP+FN + + G +   +     +V PD+V
Sbjct: 313 AYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRV 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,356
Number of Sequences: 37544
Number of extensions: 311540
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)