Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10535
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7849| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_31314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_14100| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-26)                 27   7.8  

>SB_7849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 145 RITKPLSVLRRKRYWRQSGMSPL*VLIRHRAFSS 44
           RIT  L+V+ ++R W  +G++ L  L  H  F+S
Sbjct: 90  RITNSLAVVLQRRDWENTGVTQLNRLAAHPPFAS 123


>SB_31314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 130 LSVLRRKRYWRQSGMSPL*VLIRHRAFSS 44
           L+V+ R+R W  +G++PL  L  H  F+S
Sbjct: 29  LAVVLRRRDWENTGVTPLNRLAAHPPFAS 57


>SB_14100| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-26)
          Length = 350

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 131 FVGAKA*TILETVWHVAAISPNKASCIFKCLLKSV 27
           F G K  T L +V++++AIS ++   +FK LL S+
Sbjct: 134 FEGGKDYTFLASVFNLSAISYDRYLAVFKPLLYSI 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,304
Number of Sequences: 59808
Number of extensions: 387771
Number of successful extensions: 1037
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)