Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10535
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    33   0.14 
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    29   3.0  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    29   3.0  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 255 LAESLVLIIYTPIYSKLFTNTVTTLPGAVYFLGA 356
           L E +  ++ T IY+ ++ NT+T  PG +Y + A
Sbjct: 389 LLEGITTLVATSIYNNVYPNTLTFFPGLLYLISA 422


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 303 LFTNTVTTLPGAVYFLGAAMTVPAFFLFGTLY 398
           L+ +T +TLP AVYF        +FFLF TLY
Sbjct: 527 LYCSTTSTLPPAVYFF-------SFFLFFTLY 551


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 303 LFTNTVTTLPGAVYFLGAAMTVPAFFLFGTLY 398
           L+ +T +TLP AVYF        +FFLF TLY
Sbjct: 527 LYCSTTSTLPPAVYFF-------SFFLFFTLY 551


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 346 FWAQQ*QSQLSFYSEPSTKSTKNR 417
           FW  + QS+ SFY  PS++   NR
Sbjct: 24  FWCHEGQSEHSFYCCPSSRKFANR 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,521
Number of Sequences: 27780
Number of extensions: 276605
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)