Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10535
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    29   2.8  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    28   3.6  
At4g00920.1 68417.m00125 COP1-interacting protein-related simila...    28   3.6  
At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong...    27   6.4  
At3g17265.1 68416.m02207 F-box family protein                          27   6.4  
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ...    27   8.4  

>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 474 FDYRGHAFPSVLGFGQRHAPVFC*FCRGFRIERKL 370
           FDY+GH  P  L    +  P+ C  C+  ++ + L
Sbjct: 343 FDYQGHPHPLFLALDPKEKPI-CNICKSTKVHKLL 376


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 122 HRQRLGYSPVQFLIYLEQPG*RQQGRWVLKS 214
           +R+R+    +  LIYL+  G +Q+ +W+ KS
Sbjct: 54  YRRRMKVFSIAILIYLDYKGVQQKEKWIKKS 84


>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 314

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 233 PTLSGSTTLVPNDLVAVTPVVPNKLKTGPENN 138
           P  +G    V N LV + PV PNK K G +NN
Sbjct: 224 PNSTGEKKPVTNILVLMAPV-PNKKKVGTKNN 254


>At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 607

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 133 AWLFSGPVFNLFGTTGVT-ATRSLGTKVVDPDKV 231
           A+LF+GP+FN + + G +   +     +V PD+V
Sbjct: 323 AYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRV 356


>At3g17265.1 68416.m02207 F-box family protein
          Length = 345

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 369 GLSLLRPKSKLHLVVWSPC 313
           GL L   K K  LVVW+PC
Sbjct: 113 GLLLCATKDKTRLVVWNPC 131


>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 440

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 474 FDYRGHAFPSVLGFGQRHAPVFC*FCRGFRIERKL 370
           FDY+GH  P  L    +  P+ C  CR  + ++ L
Sbjct: 264 FDYQGHRHPLFLSLDPKEKPM-CHICRSTKDKKVL 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,687
Number of Sequences: 28952
Number of extensions: 255368
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)