Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10533X
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...   118   8e-28
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    60   2e-10
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    56   3e-09
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    50   3e-07
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    45   9e-06
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    30   0.21 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   2.5  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   2.5  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    27   2.5  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   2.5  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   4.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   4.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.9  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    25   7.7  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   7.7  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score =  118 bits (283), Expect = 8e-28
 Identities = 59/85 (69%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1   EKLVAAEREFIDQRVRKIVALKKKLCDGTDKT--FVVINQKGIDPLSLDAFAKEGIIGLR 174
           E+LV +ER+F+D ++RKIV LKK++C+  D T  FV+INQKGIDPLSLD  AK GI+ LR
Sbjct: 255 ERLVESERKFVDNKLRKIVELKKEVCE-RDPTANFVIINQKGIDPLSLDVLAKNGIMALR 313

Query: 175 RAKRRNMERLALACGGSAVNSVDDL 249
           RAKRRNMERL LACGG A NSVDDL
Sbjct: 314 RAKRRNMERLQLACGGVAQNSVDDL 338



 Score =  108 bits (259), Expect = 6e-25
 Identities = 48/81 (59%), Positives = 61/81 (75%)
 Frame = +3

Query: 255 DALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNA 434
           + LG+AG VYE  LGE+K+TFVE  K+P+S TILI GPN +T+ QI+DA RDGLRA+ NA
Sbjct: 341 EVLGWAGSVYERTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNA 400

Query: 435 IEDKCVIPGAAAFEIKANTEL 497
           +ED C+I GA AFE+     L
Sbjct: 401 VEDNCLIVGAGAFEVACAAHL 421



 Score = 31.5 bits (68), Expect = 0.089
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = +2

Query: 515 VKGKARLGIQAYAEALLV 568
           VKGKA++G+ AYA+ALL+
Sbjct: 430 VKGKAKMGVYAYADALLI 447


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 DALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAIN 428
           D LG AG+V E   G   DK   +E+C N ++VT+ ++G NK  + + K A+ D L  + 
Sbjct: 353 DKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVR 412

Query: 429 NAIEDKCVIPGAAAFEIKANTELLK 503
           N I D  V+ G  A EI  +  + K
Sbjct: 413 NLIRDNRVVYGGGAAEISCSLAVTK 437


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 24/75 (32%), Positives = 43/75 (57%)
 Frame = +3

Query: 273 GLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCV 452
           GL Y   LG++ +TF+  CKNP++ TIL++GP+K  + +++  ++D +    N      +
Sbjct: 346 GLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKL 405

Query: 453 IPGAAAFEIKANTEL 497
            PG  A E+  +  L
Sbjct: 406 SPGGGATEMAVSVRL 420



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67  KKLCDG--TDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSAVNSV 240
           K++CD     K  +VI +KG+  L+     K  I  LRR ++ +  R+A ACG + VN +
Sbjct: 274 KRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRL 333

Query: 241 DDLTE 255
           +DL E
Sbjct: 334 EDLRE 338


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 25/89 (28%), Positives = 47/89 (52%)
 Frame = +3

Query: 261 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 440
           LG A  V +    +D+   V+  K   S +I+++GPN+++L +++ ++ D L  +   +E
Sbjct: 350 LGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLE 409

Query: 441 DKCVIPGAAAFEIKANTELLKYKTLLKAR 527
              V+PG  A E   +  L  + T L +R
Sbjct: 410 SGKVVPGGGAVETALSIYLENFATSLGSR 438


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 44.8 bits (101), Expect = 9e-06
 Identities = 18/89 (20%), Positives = 44/89 (49%)
 Frame = +3

Query: 261 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 440
           LG      E  +G D+F   E C   ++ T++++G     + +++ ++ D +  + +A++
Sbjct: 347 LGTCDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALK 406

Query: 441 DKCVIPGAAAFEIKANTELLKYKTLLKAR 527
           +  V+ G  A E++ +  L  Y   +  +
Sbjct: 407 NNLVVAGGGACEMELSKYLRDYSLTISGK 435


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 31  IDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLAL 210
           I Q+   I+ L  ++C    K  +V  Q  I  ++L  F + G+I     K   +  +A 
Sbjct: 587 ISQQEEYIINLVNRIC--MLKPNLVFAQGQIPSIALKYFEEHGVIAFHGLKESVLYDIAR 644

Query: 211 ACGGSAVNSVDDLT 252
            C    ++S+D L+
Sbjct: 645 CCRADIISSIDKLS 658


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 568 YQKSFGISLDSKTSLAFNSVLYFSSSVLALISKAAAP 458
           Y  +FG+S  S TS+ F+ +LY    +   +    AP
Sbjct: 412 YALAFGLSFASITSVIFHVILYHGKEIYDRLRDPPAP 448


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 404 NCIFDLCQGMLVGSLDEDGNRLWVLALFNKGKL 306
           N ++D+ Q +L   +D+D N    + +F +GK+
Sbjct: 544 NVVYDVVQQVLNAPMDKDQNYALAVDMFKQGKI 576


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 145 FAKEGIIGLRRAKRRNMERLALACGGSAVNSVD 243
           FA  GI+ +  A    +ERL+L  GG   ++ D
Sbjct: 300 FADAGIMSIEHADFDGIERLSLVTGGEIASTFD 332


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 289 TYSEKTSLP-LLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKINASYPVL 465
           TY  + ++  ++++    NLL        SIP   +       S+ L +  K    +P L
Sbjct: 33  TYKHQDAIKKVMDDIHRSNLLRQELEKNLSIPKSATATTASAVSSELASYEKPKKEHPKL 92

Query: 466 RPSKSKLT 489
           RPSK K T
Sbjct: 93  RPSKKKAT 100


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 312 TFVEQCKNPQSVTILIKGPNKH 377
           ++ E    P S+T L K PNKH
Sbjct: 562 SYRESVSEPSSMTALSKSPNKH 583


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 312 TFVEQCKNPQSVTILIKGPNKH 377
           ++ E    P S+T L K PNKH
Sbjct: 562 SYRESVSEPSSMTALSKSPNKH 583


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 265 ALQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTS 375
           +L A ST+T +   S+   N + T +L+PSSS D +S
Sbjct: 569 SLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSS 605


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 292  YSEKTSLPLLNNARTHNLLPSSSRDPTSIP 381
            Y   TS+PL  +   HNL+   SR P+S P
Sbjct: 1714 YGLSTSVPLYTSLEKHNLI---SRSPSSPP 1740


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 242 STELTADPPHARARRSILR-LFALRSPIIPSLAKASSD 132
           S E   D  HARARR +LR L    S  I  L KA S+
Sbjct: 38  SAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSE 75


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 167 PIIPSLAKASSDKGSIPFWLITTK 96
           P+ P +A    D GSI  W +  K
Sbjct: 308 PVFPCVASVGLDSGSIYIWAVEQK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,018
Number of Sequences: 5004
Number of extensions: 45841
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)