Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10533X
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   3e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  58   7e-09
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)            58   7e-09
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   38   0.004
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       32   0.28 
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)                 32   0.28 
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   2.0  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   2.6  
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.1  
SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)                    28   6.1  
SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)                    28   6.1  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/39 (66%), Positives = 34/39 (87%)
 Frame = +1

Query: 1   EKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQK 117
           EKLVAAER+F D +V+KI+ LKK++C+G +K FVVINQK
Sbjct: 322 EKLVAAERKFTDDKVQKIIDLKKQVCEGNNKGFVVINQK 360


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 DALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAIN 428
           + LG AG+V E   G  +DK   +E+C N ++VTI I+G NK  + + K ++ D L  + 
Sbjct: 349 EKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDALCVVR 408

Query: 429 NAIEDKCVIPGAAAFEIKANTELLK 503
           N + D  V+ G  A E+  +  + K
Sbjct: 409 NLVRDSRVVYGGGATELSCSIAIAK 433


>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
          Length = 206

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 DALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAIN 428
           + LG AG+V E   G  +DK   +E+C N ++VTI I+G NK  + + K ++ D L  + 
Sbjct: 64  EKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDALCVVR 123

Query: 429 NAIEDKCVIPGAAAFEIKANTELLK 503
           N + D  V+ G  A E+  +  + K
Sbjct: 124 NLVRDSRVVYGGGATELSCSIAIAK 148


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 21/57 (36%), Positives = 37/57 (64%)
 Frame = +3

Query: 309 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEI 479
           FTF+ +CKNP++ TIL++G +K  L +++  ++D +    N I D  ++PG  A E+
Sbjct: 149 FTFITECKNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEM 205



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/84 (32%), Positives = 44/84 (52%)
 Frame = +1

Query: 4   KLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAK 183
           +++  E EFI +   +++ALK  L         VI +KGI  L+     K  I  +RR +
Sbjct: 28  RVLQLEEEFIKKMCDEVIALKPDL---------VITEKGISDLAQHFLMKANITAIRRVR 78

Query: 184 RRNMERLALACGGSAVNSVDDLTE 255
           + +  R+A ACG + VN  ++L E
Sbjct: 79  KTDNNRIARACGATIVNRTEELKE 102


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 20/57 (35%), Positives = 36/57 (63%)
 Frame = +3

Query: 309 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEI 479
           FTF+ +C NP++ TIL++G +K  L +++  ++D +    N I D  ++PG  A E+
Sbjct: 206 FTFITECNNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEM 262



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 151 KEGIIGLRRAKRRNMERLALACGGSAVNSVDDLTE 255
           K  I  +RR ++ +  R+A ACG + VN  ++L E
Sbjct: 125 KANITAIRRVRKTDNNRIARACGATIVNRTEELKE 159


>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +3

Query: 261 LGFAGLVYEHVLGEDKFTFVEQCKNPQSV-TILIKGPNKHTLTQIKDAVRDGLRAINNAI 437
           LG   LVY   +GE   T  +Q +   +V T++I+G  ++ +  I+ A+ DG+ +     
Sbjct: 198 LGHCDLVYLSEIGETPVTIFKQEREETAVATVVIRGSTENIMDDIERAIDDGVNSFKALT 257

Query: 438 EDKCVIPGAAAFEIKANTELLKY 506
            D   +PGA A EI+   +L  +
Sbjct: 258 RDPRFVPGAGASEIELARKLTSH 280


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +3

Query: 261 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 440
           LG    + E ++GEDK      C   ++ T++I+G  +  L + + ++ D L  +N   +
Sbjct: 340 LGTCKKIEEVMIGEDKLIHFSGCALNEACTVVIRGATQQILDEAERSLHDALCVLNQTGK 399

Query: 441 DKCVIPGAAAFEI 479
           +   + G  A E+
Sbjct: 400 ENKTVNGGGASEV 412



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 106 INQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSAVNS 237
           IN++ I       FA  G++ +  A    +ERLAL  GG  V++
Sbjct: 288 INRQLIYNYPEQLFADAGVMAIEHADFEGVERLALVTGGEIVST 331


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +1

Query: 268 LQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 447
           LQ  S NT  E TSLP L      +L+P +S + T    ++S+ +   A + L++  ++ 
Sbjct: 114 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 173

Query: 448 ASYPVLRPSKSKLTR 492
            S+  L  S  K+T+
Sbjct: 174 -SFHALPQSTPKITK 187


>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
          Length = 565

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +1

Query: 268 LQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 447
           LQ  S NT  E TSLP L      +L+P +S + T    ++S+ +   A + L++  ++ 
Sbjct: 255 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 314

Query: 448 ASYPVLRPSKSKLTR 492
            S+  L  S  K+T+
Sbjct: 315 -SFHALPQSTPKITK 328


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +1

Query: 304 TSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKINASYPVLRPSKSK 483
           TS+ LL   R   +  + +R  +      +KMQF+TASAL   P+ ++A + ++ P    
Sbjct: 670 TSIMLLKTDRLLRVFRAKARLTSRSNLLTNKMQFLTASALTSFPVVMSAVWFLISPPDVT 729

Query: 484 LTR 492
           +T+
Sbjct: 730 VTQ 732


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 229 VNSVDDLTETL*ALQA*STNTY-SEKTSLPLLNNARTHNLLPSSSRDPTSI 378
           +N   DL + L  LQ  S+    S   S  LLN+  T NLLPS    P  I
Sbjct: 117 INRPSDLADVLGELQEFSSQLQPSLNRSTSLLNSPATENLLPSDDSLPDRI 167


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 352 SSSRDPTSIP*HKSKMQFVTASALLITPL 438
           +SS +P     H+ K+Q+   S LLITPL
Sbjct: 243 ASSSNPDQDADHQKKVQYTKGSVLLITPL 271


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 392 DLCQGMLVGSLDEDGNRL 339
           DLC+  LVG++DE G RL
Sbjct: 147 DLCETFLVGNVDESGRRL 164


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 260  SVSVRSSTELTADPPHARARRSILRLFALRSPIIPSLAKASSDKGSIPF-WLITTKVLSV 84
            S S+ +S   +A PP  R         + + PI+P L +A S+K S+    ++ +  L +
Sbjct: 1468 SPSLETSHRESAVPPRQRLLPYQATALSQKEPILPPLEEAFSEKSSVSLPEVVPSDTLPI 1527

Query: 83   PSHSF 69
            P   +
Sbjct: 1528 PPKEY 1532


>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2353

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 315 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 455
           F++ C N + + IL K P K         +R   RA    +E+KC +
Sbjct: 774 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 819


>SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)
          Length = 378

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 315 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 455
           F++ C N + + IL K P K         +R   RA    +E+KC +
Sbjct: 19  FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 64


>SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)
          Length = 364

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 92  RLSSLSTKKESTPCHWMLLPKKVLLDYAEQK 184
           RLS L  KK+   CH +L  +   LD  +QK
Sbjct: 241 RLSKLENKKQKMECHDLLADRHSKLDNEKQK 271


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 178 AKRRNMERLALACGGSAVNSVDDLTETL*ALQA*STNTYSEKTSLPLLNNARTHNLLPSS 357
           AK  +  R A  C        +DL   +    A +  TYS   SL LL+N R+  + P  
Sbjct: 797 AKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTYSSDRSLDLLSNDRSPAMTPEK 856

Query: 358 SR 363
           ++
Sbjct: 857 AK 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,384
Number of Sequences: 59808
Number of extensions: 335105
Number of successful extensions: 2098
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2097
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)