Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10533X
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.40 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   3.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
 Frame = -1

Query: 544 LDSKTSLAFNSVLYFSSSVLALISKAAAPGMTHLSSMALLIARRPSRTASLIC--VKVCL 371
           +++  S++ + V+ F++S  AL+SK +   M H+ +  L         A ++C  V   +
Sbjct: 242 INTLLSISASCVIAFATS--ALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMCQPVGTLI 299

Query: 370 LGPLMRMVTDCGFLHCSTKV--NLSSPSTC 287
           +G L  +++  G+ + +  +  +L    TC
Sbjct: 300 VGALAGLLSVLGYKYITPLIQKHLKIHDTC 329


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +3

Query: 45  KKDRCSQKETMRRY*QDFRRYQPKRNRPLVTGCFCQRRYYWTTQSKKAQY 194
           +K R + KE  R   +  R  +PK    L   C     YY     KK  Y
Sbjct: 279 RKYRETSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,514
Number of Sequences: 438
Number of extensions: 2913
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)