Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10533X
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 129 1e-30
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 129 1e-30
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 58 3e-09
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 54 5e-08
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 54 5e-08
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 43 1e-04
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 38 0.004
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 34 0.076
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 31 0.71
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 30 1.2
At5g54330.1 68418.m06766 hypothetical protein contains Pfam prof... 28 3.8
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 28 3.8
At5g20310.1 68418.m02417 hypothetical protein 28 5.0
At3g51490.1 68416.m05639 sugar transporter family protein simila... 27 6.6
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei... 27 6.6
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 27 8.7
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ... 27 8.7
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 129 bits (312), Expect = 1e-30
Identities = 58/82 (70%), Positives = 69/82 (84%)
Frame = +3
Query: 255 DALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNA 434
++LG+AGLVYEHVLGE+K+TFVEQ KNP S TILIKGPN HT+ QIKDAVRDGLR++ N
Sbjct: 344 ESLGWAGLVYEHVLGEEKYTFVEQVKNPNSCTILIKGPNDHTIAQIKDAVRDGLRSVKNT 403
Query: 435 IEDKCVIPGAAAFEIKANTELL 500
IED+CV+ GA AFE+ A LL
Sbjct: 404 IEDECVVLGAGAFEVAARQHLL 425
Score = 127 bits (306), Expect = 6e-30
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +1
Query: 1 EKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRA 180
E +V AER +D+RV+KI+ LKKK+C G + FVVINQKGIDP SLD A+EGIIGLRRA
Sbjct: 260 EAMVTAERRSVDERVKKIIELKKKVC-GDNDNFVVINQKGIDPPSLDLLAREGIIGLRRA 318
Query: 181 KRRNMERLALACGGSAVNSVDDLT 252
KRRNMERL LACGG AVNSVDDLT
Sbjct: 319 KRRNMERLVLACGGEAVNSVDDLT 342
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +2
Query: 488 HGTTEI*DTVKGKARLGIQAYAEALLV 568
H E+ TV+G+A+LG++A+A ALLV
Sbjct: 423 HLLNEVKKTVQGRAQLGVEAFANALLV 449
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 129 bits (311), Expect = 1e-30
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +3
Query: 255 DALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNA 434
D LG+AGLVYEHVLGE+K+TFVEQ KNP S TILIKGPN HT+ QIKDAVRDGLR++ N
Sbjct: 345 DCLGWAGLVYEHVLGEEKYTFVEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNT 404
Query: 435 IEDKCVIPGAAAFEIKANTELL 500
+ED+CV+ GA AFE+ A L+
Sbjct: 405 LEDECVVLGAGAFEVAARQHLI 426
Score = 128 bits (308), Expect = 3e-30
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +1
Query: 1 EKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRA 180
E +V AER +D+RV+KI+ LK K+C G D +FV++NQKGIDP SLD A+EGII LRRA
Sbjct: 260 EAMVTAERRSVDERVQKIIELKNKVCAGNDNSFVILNQKGIDPPSLDLLAREGIIALRRA 319
Query: 181 KRRNMERLALACGGSAVNSVDDLT 252
KRRNMERL LACGG AVNSVDDLT
Sbjct: 320 KRRNMERLVLACGGEAVNSVDDLT 343
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +2
Query: 488 HGTTEI*DTVKGKARLGIQAYAEALLV 568
H E+ TV+G+A+LG++A+A ALLV
Sbjct: 424 HLINEVKKTVQGRAQLGVEAFANALLV 450
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/76 (30%), Positives = 46/76 (60%)
Frame = +3
Query: 270 AGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKC 449
AGL +G+D F+F+ CK P++ T+L++GP+K + +++ ++D + N I++
Sbjct: 347 AGLFEVKKIGDDFFSFIVDCKEPKACTVLLRGPSKDFINEVERNLQDAMSVARNIIKNPK 406
Query: 450 VIPGAAAFEIKANTEL 497
++PG A E+ + L
Sbjct: 407 LVPGGGATELTVSATL 422
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +1
Query: 1 EKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRA 180
E L+ E E+I+ +I+ K L VI +KG+ L+ F+K G+ +RR
Sbjct: 265 EVLLKLEEEYIENICVQILKFKPDL---------VITEKGLSDLACHYFSKAGVSAIRRL 315
Query: 181 KRRNMERLALACGGSAVNSVDDLTET 258
++ + R+A ACG VN D+L E+
Sbjct: 316 RKTDNNRIAKACGAVIVNRPDELQES 341
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 255 DALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAIN 428
+ LG AG+V E G +++ ++E C N ++VT+ I+G NK + + K ++ D L
Sbjct: 271 EKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVAR 330
Query: 429 NAIEDKCVIPGAAAFEI 479
N I +K ++ G A EI
Sbjct: 331 NLIRNKSIVYGGGAAEI 347
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 255 DALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAIN 428
+ LG AG+V E G +++ ++E C N ++VT+ I+G NK + + K ++ D L
Sbjct: 347 EKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVAR 406
Query: 429 NAIEDKCVIPGAAAFEI 479
N I +K ++ G A EI
Sbjct: 407 NLIRNKSIVYGGGAAEI 423
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +3
Query: 261 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 440
LG L+ E ++GEDK C+ Q+ +I+++G + H L + + ++ D L ++ +
Sbjct: 338 LGHCKLIEEIMIGEDKLIHFSGCEMGQACSIVLRGASHHVLDEAERSLHDALCVLSQTVN 397
Query: 441 DKCVIPG 461
D V+ G
Sbjct: 398 DTRVLLG 404
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +1
Query: 4 KLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAK 183
++ AE+E + +V+KI+ G + +N++ I + FA GI+ + A
Sbjct: 261 EIEGAEKEKMKDKVKKIIG------HGIN---CFVNRQLIYNFPEELFADAGILAIEHAD 311
Query: 184 RRNMERLALACGGSAVNSVDD 246
+ERL L GG ++ D+
Sbjct: 312 FEGIERLGLVTGGEIASTFDN 332
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 261 LGFAGLVYEHVLGEDKFTFVEQCKNPQSV-TILIKGPNKHTLTQIKDAVRDGLRAINNAI 437
LG+ + +G T + S+ T++++G L ++ AV DG+
Sbjct: 347 LGYVDSISVEEIGGVTVTIARNEEGGNSISTVVLRGSTDSILDDLERAVDDGVNTYKAMC 406
Query: 438 EDKCVIPGAAAFEIKANTELLKY 506
D ++PGAAA EI+ L +Y
Sbjct: 407 RDSRIVPGAAATEIELAQRLKEY 429
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 33.9 bits (74), Expect = 0.076
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 315 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL-RAINNAIEDKCVIPGAAAFEIKANT 491
+ E C P TIL++G N+ L ++K V+ G+ A + A+E + A+ E+ N+
Sbjct: 608 YFEHCPKPLGFTILLRGANEDELKKVKHVVQYGVFAAYHLALETSFLADEGASPELPLNS 667
Query: 492 EL 497
+
Sbjct: 668 PI 669
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 315 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL-RAINNAIEDKCVI-PGAAAFEIKAN 488
F + C P TIL+KG ++ L ++K ++ G+ A + A+E + GA+ E+
Sbjct: 595 FFDGCPKPLGCTILLKGAHEDELKKVKHVIQYGVFAAYHLALETSFLADEGASIHELPLQ 654
Query: 489 TEL 497
T +
Sbjct: 655 TPI 657
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 215 HARARRSILRLFAL-RSPIIPSLAKASSDKGSIP 117
H ARR +L L P+IP+L K SS + S+P
Sbjct: 206 HESARRLLLELVEFSEKPLIPALPKPSSKESSLP 239
>At5g54330.1 68418.m06766 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 356
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 473 EGRSTGYDAFIFNGVINSAEAVTNCIFDLCQGMLVGSLDEDGNRLW 336
E RSTG + F+ +AE V + ++V LDE GN ++
Sbjct: 241 ESRSTGGEMFLVKWYKRTAEIVNGVAKMGTEALMVFKLDEQGNAVY 286
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -3
Query: 251 VRSSTELTADPPHARARRSILRLFALRSPIIPSLAKASSD 132
V +ST+ ++DP AR RS+ R+ + ++ ++A+A+ D
Sbjct: 249 VSTSTQNSSDPDPARKIRSVARVVNPMATVMKAVAEAAED 288
>At5g20310.1 68418.m02417 hypothetical protein
Length = 394
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 547 SLDSKTSLAFNSVLYFSSSVLALISKAAAPGMTHLSSMALL 425
S+DS +S+ ++ SSVLA K AAP M + ++L
Sbjct: 210 SVDSDSSVNISNRFSTDSSVLAFYEKLAAPPMLEIPRFSVL 250
>At3g51490.1 68416.m05639 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 729
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 119 PFWLITTKVLSVPSHSFFLRATIFL 45
P W + VLS+PS ++F+ A FL
Sbjct: 161 PSWRLMLGVLSIPSIAYFVLAAFFL 185
>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 268
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 312 TFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKC 449
+F +CK P+ + PN L +I D + G N A +KC
Sbjct: 23 SFCNRCKQPRLIMDNNTSPNSKWLPRIGDWICTGCTNNNYASREKC 68
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 415 RPSRTASLICVKVCLLGPLMRMVTDCGFLHCSTKVNLSS 299
RP+ ++ V C R+VT F +CST +++S+
Sbjct: 71 RPTTKSTSSSVVTCDTSSPFRLVTSISFTNCSTDLSIST 109
>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 862
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 19 EREFIDQRVRK-IVALKKKLCDGTDKTFVVINQKGIDPLS 135
+++ +D+R +++L +LCD +++ +G DPLS
Sbjct: 596 DQDTLDKRPSDDLISLLNRLCDDPSNLVFIVSGRGKDPLS 635
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,878
Number of Sequences: 28952
Number of extensions: 239670
Number of successful extensions: 678
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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