Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10532
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              108   4e-24
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.7  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   8.7  
SB_38693| Best HMM Match : DIE2_ALG10 (HMM E-Value=0.18)               27   8.7  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  108 bits (259), Expect = 4e-24
 Identities = 51/84 (60%), Positives = 62/84 (73%)
 Frame = +1

Query: 238 CRGSGEVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 417
           C   G +T+D R++++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL+
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLL 246

Query: 418 QGQRNAREAVRHFGPAPGAPRSHT 489
           QG R AREA RH G APG P S T
Sbjct: 247 QGPRKAREAERHMGLAPGVPHSDT 270



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 39/83 (46%), Positives = 48/83 (57%)
 Frame = +2

Query: 5   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 184
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 185 SVSRLARHMKKPTREGLIAVVVG 253
           S++RL R MK    +  I VVVG
Sbjct: 169 SLARLVRKMKASGHKDKICVVVG 191


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 393 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 283
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 352 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 483
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 296 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 415
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 340 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 459
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 250 HYHGNQTLTSWLLHVARQTRHRDWW 176
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_38693| Best HMM Match : DIE2_ALG10 (HMM E-Value=0.18)
          Length = 583

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 265 HL*LPHYHGNQTLTSWLLHVARQTRHRDW 179
           +L L H H N  L ++   +    RHRDW
Sbjct: 489 YLYLEHTHSNPVLVTFCRLLVMSLRHRDW 517


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 471  SWSRAKVTHCLTSISLTLYQY 409
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,671,544
Number of Sequences: 59808
Number of extensions: 419474
Number of successful extensions: 1114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)