Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10531X
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 76 2e-15
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 75 4e-15
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.6
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 4.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 6.1
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 24 8.0
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 24 8.0
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 76.2 bits (179), Expect = 2e-15
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+L T+ ARARIL AGGE+LT DQLALRAPTG NTVLV+G+++AREA R F
Sbjct: 104 ALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHF 154
Score = 66.1 bits (154), Expect = 2e-12
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +3
Query: 66 TNAKFNQIVLRRLFMSRINRPPISVSRLA--RHMKKPTREGLIAVVVGTVTNDVRLYKIP 239
T+++FN+ +L+RLF S+ NRPPIS+S++A K + + VVVGTVT+D R+ +P
Sbjct: 39 TDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVP 98
Query: 240 KMTVALFMLPK 272
K+++A K
Sbjct: 99 KLSIAALRFTK 109
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 74.9 bits (176), Expect = 4e-15
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+L T+ ARARIL AGGE+LT DQLALRAPTG NTVL++G+++AREA R F
Sbjct: 104 ALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHF 154
Score = 70.1 bits (164), Expect = 1e-13
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Frame = +3
Query: 66 TNAKFNQIVLRRLFMSRINRPPISVSRLA--RHMKKPTREGLIAVVVGTVTNDVRLYKIP 239
T+++FN+ +L+RLF S+ NRPPIS+S++A K + EG V+VGTVT+D RL +P
Sbjct: 39 TDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVP 98
Query: 240 KMTVALFMLPK 272
K++VA K
Sbjct: 99 KLSVAALRFTK 109
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 2.6
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 363 STVFLPVGARRAS*SKVRISP---PAAKMRARAFSVT*REPPSSSVS 232
S+ P R AS VR S PA RAR SV+ ++ PSSS+S
Sbjct: 709 SSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMS 755
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 4.6
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 183 LIAVVVGTVTNDVRLYKI 236
L+ +VV +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 204 TVTNDVRLYKIPKMTVALFMLPKKLEHAFWLLEEKFLLLIS 326
++++D R+Y + + + L KL+H +W L F L I+
Sbjct: 467 SMSDDGRIYFMNTRDIKVRSLVVKLKHKYWHLSSGFHLHIT 507
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 305 EILTFDQLALRAPTGKNTVLVQGQRNAREAV 397
E+L D +L P+GK T LV + + +
Sbjct: 434 EVLVLDNFSLVCPSGKITALVGASGSGKSTI 464
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 24.2 bits (50), Expect = 8.0
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 222 RLYKIPKMTVALFMLPKKLEHAFWLLEEKFLLLISWLFVLRLARIQYWYKVSEMLGR 392
+LY + ++ ++L L + +E LLEE L I W+ L ++ Y +EM R
Sbjct: 542 QLYAL-RLDISLGNLSQAIEGIDKLLEEPEKLAIEWVLQLMFLKVDI-YMRTEMSNR 596
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 8.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Frame = -1
Query: 203 PHYHGNQALTSWLLHVARQTRHRDWWPVDTAH 108
P YH + L+H+ R +W P H
Sbjct: 220 PTYHFANVVDDHLMHITHVIRGEEWVPSTIKH 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,615
Number of Sequences: 5004
Number of extensions: 30615
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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