Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10531X
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 77 7e-15
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 76 1e-14
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 76 1e-14
12_02_1176 + 26705994-26707175 32 0.16
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 1.4
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 4.4
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 27 4.4
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 5.8
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 5.8
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 27 7.7
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 27 7.7
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 76.6 bits (180), Expect = 7e-15
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+L TE ARARI+ AGGE LTFDQLALRAP G+NTVL++G +NAREAVR F
Sbjct: 102 ALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHF 152
Score = 71.7 bits (168), Expect = 2e-13
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +3
Query: 66 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 245
T + FN ++L+RLFMS+ NRPP+S+ RLA+ M + E IAV+VGTVT+D R+ +IPKM
Sbjct: 40 TKSNFNAVILKRLFMSKTNRPPLSLRRLAKFM-EGKEENNIAVIVGTVTDDKRIQEIPKM 98
Query: 246 TV 251
V
Sbjct: 99 KV 100
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 75.8 bits (178), Expect = 1e-14
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+L TE ARARI+ AGGE LTFDQLALRAP G+NTVL++G +NAREAV+ F
Sbjct: 109 ALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF 159
Score = 72.5 bits (170), Expect = 1e-13
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = +3
Query: 6 KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM--KKPTRE 179
+S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R M K P R
Sbjct: 20 RSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRFMEGKVPDRH 79
Query: 180 GL----IAVVVGTVTNDVRLYKIPKMTVA 254
+ IAV+VGTVT+D R+Y++P M VA
Sbjct: 80 AISGDQIAVIVGTVTDDKRIYEVPAMKVA 108
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 75.8 bits (178), Expect = 1e-14
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +3
Query: 6 KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R M+ +E
Sbjct: 20 KSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRFME--GKENQ 77
Query: 186 IAVVVGTVTNDVRLYKIPKMTVA 254
IAV+VGTVT+D R+Y++P M VA
Sbjct: 78 IAVIVGTVTDDKRVYEVPAMKVA 100
Score = 56.4 bits (130), Expect = 8e-09
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 17/68 (25%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNT-----------------VLVQGQRN 382
+L TE ARARI+ GGE LTFDQLALRAP G+NT VL++G +N
Sbjct: 101 ALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKN 160
Query: 383 AREAVRDF 406
AREAV+ F
Sbjct: 161 AREAVKHF 168
>12_02_1176 + 26705994-26707175
Length = 393
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +2
Query: 233 DTEDDGGSLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRD 403
D +DD G +H + R A Q+ A GKN V V GQ AV D
Sbjct: 52 DVDDDAGIIHAPDVDRPATRFAAAPAAGGGQMHFLAMAGKNIVAVDGQGGGPTAVYD 108
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 202 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 98
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 405 KSRTASRAFR*PCTSTVFLPVGARRAS*SKVRISP-PAAKMRARAFSVT*REPP 247
+ RT S+ R +STV + R+S S +R+SP P + R R S R P
Sbjct: 124 RGRTKSKPIRISGSSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPSSAASRSSP 177
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 248 RHLRYLVQSHVICDCPHYHGNQALT 174
R+L++L++ CD PHYH + AL+
Sbjct: 652 RYLQWLIEEQE-CDEPHYHTSYALS 675
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 184 KPSRVGFFMWRAKRDTEIG 128
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 92 STPALYEPYQPATNLCV-SFGAPHEEANS 175
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>12_01_0250 -
1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 386 EHFADLVPVLYSCQSEHEEPADQK*EF 306
+H A LVP+L+ C S E + +K +F
Sbjct: 14 DHLAQLVPLLHECASHVTEGSFEKADF 40
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 308 FLLQQPKCVLELFR*HEESHRHLRYLVQSHVICDCPHYHGNQALTSWLLHVARQTRHRDW 129
F+ + K +EL + S +H++ + +SH DC G A T + VAR T R W
Sbjct: 355 FMWDEEKVNMELHKYMNNSFQHIKAMCKSH---DCNLRMG--AFTLGVNRVARATLLRGW 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,300,203
Number of Sequences: 37544
Number of extensions: 240514
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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