Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10531X
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   3e-14
SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             28   3.4  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   4.5  
SB_42079| Best HMM Match : L_lactis_RepB_C (HMM E-Value=0.16)          27   6.0  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 27   7.9  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   27   7.9  
SB_18368| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 37/49 (75%), Positives = 41/49 (83%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVR 400
           +L  +E ARARIL AGGEILTFDQLALRAP G+NTVL+QG R AREA R
Sbjct: 209 ALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLLQGPRKAREAER 257



 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 32/62 (51%), Positives = 47/62 (75%)
 Frame = +3

Query: 66  TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 245
           TNAKFNQIV++RL MSR  RPP+S++RL R MK    +  I VVVG++T+D R++++P +
Sbjct: 146 TNAKFNQIVMKRLCMSRTKRPPLSLARLVRKMKASGHKDKICVVVGSITDDKRIFEVPAL 205

Query: 246 TV 251
            +
Sbjct: 206 KI 207


>SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 274 SSSTHFGCWRRNSYF*SAGSSCSDWQEYSTGTRS 375
           S STHF C    SY  S  S  +  Q YST T S
Sbjct: 73  SPSTHFHCTVAQSYSTSTHSHGTVAQSYSTSTHS 106


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 276 LEHAFWLLEEKFLLLISWLFVLR-LARIQYWYKVS 377
           L H  WL +  +L  + WL+ +R L  +++ Y VS
Sbjct: 106 LYHVIWLYDVSWLYHVRWLYYVRWLYHVRWLYHVS 140


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 200 HYHGNQALTSWLLHVARQTRHRDWW 126
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_42079| Best HMM Match : L_lactis_RepB_C (HMM E-Value=0.16)
          Length = 641

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 180 GLIAVVVGTVTNDVRLYKIPKMTVALFMLPKKLEHAFWLLE 302
           G IAV V  +  +V +Y  PK    +F L   + HA  LLE
Sbjct: 310 GCIAVTVTQLIANVVVYYAPKAKTYMFGLELTVPHAATLLE 350


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 221  ETVQDTEDDGGSLHVTEKARARILAAGG 304
            + V++ EDDGGS  VTE++R  +L+  G
Sbjct: 1075 DIVEEEEDDGGS--VTEESREVLLSQDG 1100


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 262 MKRATVIFGILYSLTSFVTVPTTTAIKPSR 173
           ++  T++FGIL  L +     TT  IKP R
Sbjct: 618 LRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_18368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 180 GLIAVVVGTVTNDVRLYKIPKMTVALFMLPKKLEHAFWLLE 302
           G IAV V  +  +V +Y  PK    +F L   + HA  LLE
Sbjct: 19  GCIAVTVTQLIANVVVYYAPKAKTYMFGLELTVPHAARLLE 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,981
Number of Sequences: 59808
Number of extensions: 244583
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)