Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10531X
         (410 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...    91   1e-18
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...    91   1e-18
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...    91   1e-18
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...    91   1e-18
BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...    89   5e-18
DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18 p...    87   2e-17

>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +3

Query: 6   KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
           KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE  
Sbjct: 19  KSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENK 78

Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
            AVVVGT+T+DVR+ ++PK+ V
Sbjct: 79  TAVVVGTITDDVRVQEVPKLKV 100



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
           +L VT +AR+RIL AGG+ILTFDQLAL +P G  TVL+ G R  RE  R F
Sbjct: 102 ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +3

Query: 6   KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
           KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE  
Sbjct: 19  KSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENK 78

Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
            AVVVGT+T+DVR+ ++PK+ V
Sbjct: 79  TAVVVGTITDDVRVQEVPKLKV 100



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
           +L VT +AR+RIL AGG+ILTFDQLAL +P G  TVL+ G R  RE  R F
Sbjct: 102 ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +3

Query: 6   KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
           KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE  
Sbjct: 19  KSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENK 78

Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
            AVVVGT+T+DVR+ ++PK+ V
Sbjct: 79  TAVVVGTITDDVRVQEVPKLKV 100



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
           +L VT +AR+RIL AGG+ILTFDQLAL +P G  TVL+ G R  RE  R F
Sbjct: 102 ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +3

Query: 6   KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
           KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE  
Sbjct: 19  KSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENK 78

Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
            AVVVGT+T+DVR+ ++PK+ V
Sbjct: 79  TAVVVGTITDDVRVQEVPKLKV 100



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
           +L VT +AR+RIL AGG+ILTFDQLAL +P G  TVL+ G R  RE  R F
Sbjct: 102 ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152


>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 89.0 bits (211), Expect = 5e-18
 Identities = 43/82 (52%), Positives = 55/82 (67%)
 Frame = +3

Query: 6   KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
           KSQDI               TN+ FNQ+VL+RLFMSR NRPP+ +SR+ R MK P RE  
Sbjct: 19  KSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCLSRMIRKMKLPGRENK 78

Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
            AVVVGT+T+DVR+ ++PK+ V
Sbjct: 79  TAVVVGTITDDVRVQEVPKLKV 100



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
           +L VT +AR+RIL AGG+ILTFDQLAL +P G  TVL+ G R  RE  R F
Sbjct: 102 ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 152


>DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18
           protein.
          Length = 164

 Score = 87.4 bits (207), Expect = 2e-17
 Identities = 39/62 (62%), Positives = 51/62 (82%)
 Frame = +3

Query: 66  TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 245
           TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE   AVVVGT+T+DVR+ ++PK+
Sbjct: 16  TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75

Query: 246 TV 251
            V
Sbjct: 76  KV 77



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
           +L VT +AR+RIL AGG+ILTFDQLAL +P G  TVL+ G R  RE  R F
Sbjct: 79  ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHF 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,887,571
Number of Sequences: 237096
Number of extensions: 1249818
Number of successful extensions: 6213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6209
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)