Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10531X
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical ... 77 5e-15
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 31 0.43
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 31 0.43
Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical pr... 29 0.99
Z74038-1|CAA98497.2| 578|Caenorhabditis elegans Hypothetical pr... 29 0.99
Z70754-5|CAA94775.1| 304|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z35604-7|CAA84682.1| 304|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 26 9.2
>AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical
protein Y45F10D.12 protein.
Length = 188
Score = 77.0 bits (181), Expect = 5e-15
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+LHVTE ARARILAAGGEI+T DQLAL++P G+NTV +QG R+AREA + F
Sbjct: 102 ALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHF 152
Score = 68.9 bits (161), Expect = 1e-12
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +3
Query: 66 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 245
T KFN IVL+RL MSR NR P+S+++LAR ++K E V + TVT+D RLY +PK+
Sbjct: 39 TGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKI 98
Query: 246 TVA 254
+VA
Sbjct: 99 SVA 101
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 30.7 bits (66), Expect = 0.43
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 77 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GLDCR-GSGDSHK*RETVQDTED 244
+ +D S+P+ ++P +TN S+ P E++ G D G+ DS + R T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 30.7 bits (66), Expect = 0.43
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 77 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GLDCR-GSGDSHK*RETVQDTED 244
+ +D S+P+ ++P +TN S+ P E++ G D G+ DS + R T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256
>Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical
protein F58B4.1b protein.
Length = 611
Score = 29.5 bits (63), Expect = 0.99
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 218 RETVQD-TEDDGGSLHVTEKARAR--ILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAR 388
RE +D + +G +LH KA IL G +LT DQ+A T + R R
Sbjct: 99 REKPRDRVKMEGDTLHQVNKAAGLNDILYQGDMVLTDDQIATILEARDETTVSTASRARR 158
Query: 389 EAVRD 403
+A RD
Sbjct: 159 QAYRD 163
>Z74038-1|CAA98497.2| 578|Caenorhabditis elegans Hypothetical
protein F58B4.1a protein.
Length = 578
Score = 29.5 bits (63), Expect = 0.99
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 218 RETVQD-TEDDGGSLHVTEKARAR--ILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAR 388
RE +D + +G +LH KA IL G +LT DQ+A T + R R
Sbjct: 99 REKPRDRVKMEGDTLHQVNKAAGLNDILYQGDMVLTDDQIATILEARDETTVSTASRARR 158
Query: 389 EAVRD 403
+A RD
Sbjct: 159 QAYRD 163
>Z70754-5|CAA94775.1| 304|Caenorhabditis elegans Hypothetical
protein F58E6.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +2
Query: 221 ETVQDTEDDGGSLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVR 400
++V D EDD G++ E +A E +L P G T +V N +R
Sbjct: 176 DSVSDEEDDEGAVEGAEHTNPAGVATSNEAGNMSELRTTRPAGAFTGVVASNDNPMSELR 235
Query: 401 DFR 409
R
Sbjct: 236 TTR 238
>Z35604-7|CAA84682.1| 304|Caenorhabditis elegans Hypothetical
protein ZK1058.9 protein.
Length = 304
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 250 WLSSCYRKSSSTHFGCWRRNSYF*SAGSSCSDWQEY 357
W SCY S HF +R ++Y SS + W Y
Sbjct: 272 WYWSCYGNSGLRHFNSYRPHNY----TSSTASWSRY 303
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 204 TVTNDVRLYKIPKMTVALFMLPKKLEHAFWLLEEKFLL 317
+V N + L KI + L L KK+E FW E LL
Sbjct: 156 SVDNSIDLQKIKLICEKLIGLEKKMEVTFWTSEIMKLL 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,160,957
Number of Sequences: 27780
Number of extensions: 185822
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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