Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10531X
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.083
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.58 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.58 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    20   9.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    20   9.5  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 0.083
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 11  SRYLLXXTCKALQILGQTXKCQIQSDRSTPALYEPYQPA 127
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 241 FGILYSLTSFVTVPTTTA 188
           FG +Y L ++  VPTTTA
Sbjct: 367 FGSIYFLGNYSLVPTTTA 384


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 322 SAGSSCSDWQEYSTGTRSAKCS 387
           SAG+SC    E    TRSA C+
Sbjct: 26  SAGTSCKWLSEGGNDTRSADCT 47


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 247 VIFGILYSLTSFVTVPTTTAIKPS 176
           VIFG+L+ L SF+   T T ++P+
Sbjct: 17  VIFGVLFVLFSFLR--TRTKLQPT 38


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 247 VIFGILYSLTSFVTVPTTTAIKPS 176
           VIFG+L+ L SF+   T T ++P+
Sbjct: 17  VIFGVLFVLFSFLR--TRTKLQPT 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 151 AKRDTEIGGRLIRLIKSRRRTI 86
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 395 LPPEHFADLVPVLYSCQSEHEEPADQK*EFLLQQP 291
           + PE   +L+  L   Q+E+E+P+++  + +  QP
Sbjct: 331 ISPEQ-EELIHRLVYFQNEYEQPSEEDLKRITNQP 364


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 379 SLTLYQYCILASRS 338
           S+T Y YC+L + S
Sbjct: 69  SITCYMYCLLEAFS 82


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 379 SLTLYQYCILASRS 338
           S+T Y YC+L + S
Sbjct: 69  SITCYMYCLLEAFS 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,542
Number of Sequences: 438
Number of extensions: 2191
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)