Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10531X
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 74 3e-14
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 74 3e-14
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 64 4e-11
At5g05630.1 68418.m00614 amino acid permease family protein weak... 30 0.53
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 30 0.70
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 29 0.92
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 29 1.2
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 29 1.2
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 29 1.2
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 29 1.6
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 29 1.6
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 29 1.6
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 2.8
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 27 3.7
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 3.7
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 3.7
At3g46850.1 68416.m05085 subtilase family protein contains simil... 27 4.9
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 74.1 bits (174), Expect = 3e-14
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+L TE+ARARI AGGE LTFDQLALRAP G+NTVL++G +N+REAV+ F
Sbjct: 101 ALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHF 151
Score = 67.3 bits (157), Expect = 4e-12
Identities = 32/82 (39%), Positives = 52/82 (63%)
Frame = +3
Query: 6 KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M ++
Sbjct: 20 KSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM--TGKDDK 77
Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
IAV+VGT+T+D+R+++IP M V
Sbjct: 78 IAVLVGTITDDLRVHEIPAMKV 99
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 74.1 bits (174), Expect = 3e-14
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPTGKNTVLVQGQRNAREAVRDF 406
+L TE+ARARI AGGE LTFDQLALRAP G+NTVL++G +N+REAV+ F
Sbjct: 101 ALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHF 151
Score = 71.7 bits (168), Expect = 2e-13
Identities = 35/82 (42%), Positives = 53/82 (64%)
Frame = +3
Query: 6 KSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGL 185
KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M +E
Sbjct: 20 KSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM--TGKEDK 77
Query: 186 IAVVVGTVTNDVRLYKIPKMTV 251
IAV+VGT+T+D+R+++IP M V
Sbjct: 78 IAVLVGTITDDLRVHEIPAMKV 99
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 64.1 bits (149), Expect = 4e-11
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 SLHVTEKARARILAAGGEILTFDQLALRAPT-GKNTVLVQGQRNAREAVRDF 406
+L TE ARARI AGGE LTFDQLAL PT +NTVL++G +N REAV+ F
Sbjct: 48 ALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHF 99
Score = 54.8 bits (126), Expect = 2e-08
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +3
Query: 108 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTV 251
MS++N+ P+S+SRL R+M ++G IAV+VGTVT+DVR+ +P +TV
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTV 46
>At5g05630.1 68418.m00614 amino acid permease family protein weak
similarity to y+LAT1a (amino acid transporter) [Mus
musculus] GI:3970791; contains Pfam profile PF00324:
Amino acid permease
Length = 490
Score = 30.3 bits (65), Expect = 0.53
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 195 VVGTVTNDVRLYKIPKMTVALFMLPKKLEHAFWLLEEKFLLLISWLFVLRLA--RIQYWY 368
+VG + ++ I V FM KL+ + WL+ K + ++W L + YW
Sbjct: 190 IVGVAAVLLGVFSILPFVVMSFMSIPKLKPSRWLVVSKKMKGVNWSLYLNTLFWNLNYWD 249
Query: 369 KVSEMLG 389
VS + G
Sbjct: 250 SVSTLTG 256
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.9 bits (64), Expect = 0.70
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 305 EILTFDQLALRAPTGKNTVLVQGQRNAREAV 397
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 29.5 bits (63), Expect = 0.92
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 235 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 98
+LY LTS + VPT T + S + F RA D I ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 235 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 140
+LY LTS + VPT T + S + F RA D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 238 GILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 140
G+LY LTS + V T T K S V F RA D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 235 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 140
+LY LTS + VPT T + S + F RA D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 317 FDQLALRAPTGKNTVLVQGQRNAREAV 397
FD L LR P+GK+ LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 317 FDQLALRAPTGKNTVLVQGQRNAREAV 397
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 256 SSCYRKSSSTHFGCWRRNSYF 318
S+C RKS+ + C+ RN YF
Sbjct: 424 SACMRKSNGFGYSCYNRNCYF 444
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 81 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 188
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +2
Query: 236 TEDDGGSLHV-------TEKARARILAAGGEILTFDQLALRAPTGK--NTVLVQGQRNAR 388
T DDG S++V TE+A R+ + G +LT + R+ GK V +R+A
Sbjct: 2 TMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSAD 61
Query: 389 EAVRD 403
+A+ D
Sbjct: 62 DAIED 66
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 305 EILTFDQLALRAPTGKNTVLVQGQRNAREAV 397
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 305 EILTFDQLALRAPTGKNTVLVQGQRNAREAV 397
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -1
Query: 260 EESHRHLRYLVQSHVICDCPHYHGNQALTS-----WLLHVARQTRHRDWWPVDTAHKEPA 96
E RH++Y V S CPH G A W + + WP++ A P+
Sbjct: 512 ESDTRHVKYTVISGTSMSCPHVAGVAAYIKTFHPLWSPSMIQSAIMTTAWPMN-ASTSPS 570
Query: 95 *NDLIEF 75
N+L EF
Sbjct: 571 -NELAEF 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,712,741
Number of Sequences: 28952
Number of extensions: 176368
Number of successful extensions: 437
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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