Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10530
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 125 8e-30
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 116 5e-27
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 32 0.11
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.58
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 29 0.77
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 3.1
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 27 4.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 5.4
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 5.4
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 26 5.4
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 7.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.4
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 125 bits (301), Expect = 8e-30
Identities = 55/91 (60%), Positives = 68/91 (74%)
Frame = +2
Query: 2 PDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAA 181
PDGT RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGYGAA
Sbjct: 129 PDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAA 188
Query: 182 LNTAKVEPGSNCAIFGLGAVGLAVVLDAKRQ 274
TA ++ G + A+FGLG+VGLAV+ A ++
Sbjct: 189 TITADIKEGDSVAVFGLGSVGLAVIQGAVKK 219
Score = 112 bits (270), Expect = 5e-26
Identities = 51/81 (62%), Positives = 62/81 (76%)
Frame = +3
Query: 510 VAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLK 689
VAAAG+EISTRPFQLVTGR W+G AFGG K R +P LV EYL+ KL +D+++TH PLK
Sbjct: 299 VAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLK 358
Query: 690 EINEAFHLMHAGKSIRAVVDM 752
EINEAF MH G I+ V+ +
Sbjct: 359 EINEAFTDMHNGNCIKTVLSI 379
Score = 109 bits (263), Expect = 3e-25
Identities = 45/77 (58%), Positives = 57/77 (74%)
Frame = +1
Query: 277 ANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTM 456
A RI G+D+NP+K A FG +F+NP D PIQ VL+ TDGGL++TF+C GNV M
Sbjct: 221 AGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVM 280
Query: 457 RAALEACHKGWGVSVII 507
R+ALEACHKGWG S++I
Sbjct: 281 RSALEACHKGWGQSIVI 297
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 116 bits (278), Expect = 5e-27
Identities = 51/88 (57%), Positives = 65/88 (73%)
Frame = +2
Query: 2 PDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAA 181
PDGT RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV TG+GA
Sbjct: 126 PDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAV 185
Query: 182 LNTAKVEPGSNCAIFGLGAVGLAVVLDA 265
++AKVE GS A+ G G VGLA + A
Sbjct: 186 THSAKVESGSTVAVVGCGCVGLAAMQGA 213
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/81 (54%), Positives = 56/81 (69%)
Frame = +3
Query: 510 VAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLK 689
VAAAG+ + RPF +VTGR G+AFGG K R +P VDEY++ +DE++T+ PLK
Sbjct: 295 VAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLK 354
Query: 690 EINEAFHLMHAGKSIRAVVDM 752
IN+AF MH GK IR VVDM
Sbjct: 355 NINKAFDHMHEGKCIRCVVDM 375
Score = 92.7 bits (220), Expect = 5e-20
Identities = 41/83 (49%), Positives = 56/83 (67%)
Frame = +1
Query: 259 GCKAAGANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECI 438
G AAGA+RII +DIN DK AKKFG +F++ K + Q ++D+TDGG++Y F+C
Sbjct: 212 GAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKV-KDLVQYVIDVTDGGVDYAFDCT 270
Query: 439 GNVGTMRAALEACHKGWGVSVII 507
GNV M+ L+ CHKGWG +I
Sbjct: 271 GNVTVMQQELQFCHKGWGKLCVI 293
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 31.9 bits (69), Expect = 0.11
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 283 RIIGVDINPDKFEVAKKFGVNEFVNP 360
R++G+D +PD + A++ G+N +V P
Sbjct: 57 RVVGIDASPDMIKAARELGLNAYVIP 82
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.58
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -1
Query: 611 TFSTFVTSKSCSLPGATCNKLEWTSADLFSSSSYT-MITDTPHPLWQASSAALMVPTFPI 435
+ S+FV + ++ T + + + A SSS T ++ T ++ S+ VPT I
Sbjct: 212 SLSSFVIT---NVDSTTTSVINYIGASTLESSSLTNTVSPTESTFYETKSSTSSVPTQTI 268
Query: 434 HSKVY-SRPPSVKXXXXXXXXXXXXXXXXXXXTPNFLATSNLSGLMSTPIMRLAPA 270
S + S P TP+ +ATS L S+PI AP+
Sbjct: 269 DSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPS 324
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 56 GCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK--VEPGSNCAIFG 229
GC F +Y V+ +L + +++ L C T + + + V+PG+N + G
Sbjct: 116 GC--FQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNNVLVLG 173
Query: 230 LGAV 241
G V
Sbjct: 174 TGGV 177
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +2
Query: 494 CQ*SLCSCCW---RRDQHSSIPTCYRSHLEGNSFWR 592
C +C CW + D + P C R + E N WR
Sbjct: 37 CGYRVCRFCWHHIKEDLNGRCPACRRLYTEENVQWR 72
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 56 GCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFGLG 235
GC EI+ CK+ + P + + + T A +V+ G AI+G+G
Sbjct: 173 GCQAEYIRVPFAEINCCKLPDDIPDSEGLFMSDVLCTSLHAC-TLGEVKKGDTVAIWGMG 231
Query: 236 AVGL 247
+GL
Sbjct: 232 PIGL 235
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 101 LCKVAEAAPLDKVCLLGCGVPTGY 172
+CKV E A L CLL C T +
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 252 TAKPTAPRPKIAQFDPGSTLAVFKAAP*P-VGTPHPSKQTLSNGAASATLQREISRTTVY 76
+A PT+ P I +F P +T KA P P P+ QT ++ + T + TT
Sbjct: 444 SATPTSALPPIGKFAPPTTA---KAQPAPEKRRGEPAVQTRNHSKRTRTATSSVEETTPR 500
Query: 75 *LNV 64
NV
Sbjct: 501 AFNV 504
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 277 ANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLV-DLTDGGLEYTFECIGN 444
ANR + V I + ++ + G + F N K Y + IQQ+L + G Y F GN
Sbjct: 485 ANRFMRVQITDEYYKQKIRGGSDGFRNEKLYSR-IQQLLTYGIKVGNQIYEFLAFGN 540
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 560 CNKLEWTSADLFSSSSYTMITDTPHPLWQASSAALMV 450
C+ + T A+ F + +ITD HP W A+ +++
Sbjct: 129 CSVIFTTKAENFEKRLF-LITDNDHPAWDATERDIIL 164
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 218 RNLILVQLWQYSRRLHNL*VHRIPANKLYLMEQPLQLYREKFLEQLC 78
R+L V + R H L +H++ K + +Q ++ R+ L+ LC
Sbjct: 210 RDLDAVACHERIARYHILCIHQLCEKKQFSAQQEVEQLRKGILQSLC 256
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 379 IQQVLVDLTDGGLEYTFECIGNVGTMRAALEACH 480
I Q + DLT G + +C+ + A+L CH
Sbjct: 3280 IVQFITDLTVGEFQLCLKCLLSFSQHAASLRICH 3313
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 645 SSPSTHLQALVH-FLYFCNLQKLFPSRCD 562
SSPS+ L+ F Y CN+ KL+ + D
Sbjct: 914 SSPSSDLEVKQQAFTYVCNISKLYVYKSD 942
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,615
Number of Sequences: 5004
Number of extensions: 67734
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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