Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10530
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)            115   4e-26
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       30   1.9  
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                29   5.7  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            28   7.6  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score =  115 bits (277), Expect = 4e-26
 Identities = 52/73 (71%), Positives = 62/73 (84%)
 Frame = +3

Query: 510 VAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLK 689
           VAA G+EISTRPFQLVTGR WKGTAFGGYKS + VP+LV++YL  K+ +DEFVTHN+ L 
Sbjct: 42  VAAGGQEISTRPFQLVTGRVWKGTAFGGYKSGDGVPQLVEDYLAGKVMVDEFVTHNMGLD 101

Query: 690 EINEAFHLMHAGK 728
           +INEAF LMH G+
Sbjct: 102 KINEAFDLMHRGE 114



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +1

Query: 388 VLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVII 507
           VLVD+TDGGL+YTFECIGNV TMR ALEACHKGWG SVII
Sbjct: 1   VLVDMTDGGLDYTFECIGNVHTMRQALEACHKGWGESVII 40


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 306 VDVNTNNAIGTCRFASKTTAKPTAPRPKIAQFDPGSTLA-VFKAAP*PVGTPHPSKQTLS 130
           + V   N + +    S++T  P     + + F PG+TLA    AAP   GT   S+ T++
Sbjct: 567 ITVTQGNTVASESTDSESTIVPVTTVARESTFAPGTTLAPESTAAP---GTTVASESTVT 623

Query: 129 NGAASATLQREISRTTV 79
            GA  A+   +   TTV
Sbjct: 624 RGATVASASTDAQGTTV 640


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -3

Query: 264 ASKTTAKPTAPRPKIAQFDPGSTLAVFKAAP*PVGTPHPSKQTLSNGAASATLQREISRT 85
           A++TTA+P AP+       P +T      AP     P   K T    A  AT Q E + T
Sbjct: 382 ATETTAQPEAPKATALPEAPKATAQ--PEAPEATAQPEAPKATALPEAPEATAQPEATET 439

Query: 84  T 82
           T
Sbjct: 440 T 440


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 512 SCCWRRDQHSSIPTCYRSHLEGNSFWRLQK---*RKCTKACR*VLGEEAAFRRICHSQCA 682
           +C WR D+ + I TC     +    WRL +      C   CR  +  +A   R C S C 
Sbjct: 131 TCRWRLDRQADIHTC-----KSTCRWRLDRQADIHTCKSTCRWRINRQADIHR-CKSTCR 184

Query: 683 AEGDQ 697
            + D+
Sbjct: 185 WQLDR 189


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 2    PDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCL-LG----CGVPT 166
            PDG  R++C     Y    C+T+        I+ C  + A P D+VC+  G    CG P 
Sbjct: 878  PDG--RYKCTCTSRYKDENCTTY--------INECANSSACPADRVCINYGGGYLCGCPA 927

Query: 167  GY 172
            G+
Sbjct: 928  GF 929


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 179 ALNTAKVEPGSNCAIFGLGAVGLAVVLDAK 268
           A N A +  GSN  + G G +GL  +L AK
Sbjct: 151 ACNRAGITIGSNVLVCGAGPIGLVTLLTAK 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,809,711
Number of Sequences: 59808
Number of extensions: 513039
Number of successful extensions: 1308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)