Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10530
(794 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 26 0.46
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 26 0.46
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 26 0.46
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.3
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 3.3
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 23 4.3
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 5.7
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 21 10.0
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 10.0
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 21 10.0
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 25.8 bits (54), Expect = 0.46
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 636 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 737
L +PLD ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 25.8 bits (54), Expect = 0.46
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 636 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 737
L +PLD ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 25.8 bits (54), Expect = 0.46
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 636 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 737
L +PLD ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 351 KFIDSKFLSYLKLVRVDVNTNNAIGTC 271
+ D +Y KLVR VNT++ + C
Sbjct: 31 RLYDDLLSNYNKLVRPVVNTSDVLRVC 57
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 351 KFIDSKFLSYLKLVRVDVNTNNAIGTC 271
+ D +Y KLVR VNT++ + C
Sbjct: 31 RLYDDLLSNYNKLVRPVVNTSDVLRVC 57
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 367 YDKPIQQVLVDLTDGGLEYTFECIGN 444
+D+ Q+V+ G LE F C+GN
Sbjct: 140 FDQLGQEVIYTACVGLLERAFRCLGN 165
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -2
Query: 448 LHFQYIQKCILDHHQSNPPV 389
L +Y+++C+L+ + PPV
Sbjct: 395 LEMKYLERCLLETLRMYPPV 414
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 491 PHPLWQASSAALMVPTFPIHSKVYSR 414
PH WQ S+A L+ F ++V R
Sbjct: 105 PHMAWQLSTAHLLAQLFLKSTEVTPR 130
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 21.4 bits (43), Expect = 10.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 68 FSQYTVVLEISLCKV 112
+ QY VL +SLCK+
Sbjct: 102 WQQYPWVLGVSLCKI 116
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 10.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 304 NPDKFEVAKKFGVNEFVNPKDYDKP 378
N E +FG + +N K+YD P
Sbjct: 17 NSASLENDNEFGFSYLLNCKNYDHP 41
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 21.4 bits (43), Expect = 10.0
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +2
Query: 374 NQFNKYWW 397
N+ NK+WW
Sbjct: 361 NEMNKWWW 368
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,146
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -