Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10527
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    37   0.004
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   7.6  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +2

Query: 113 ELIKSYLSGRIQKVDVKGTRSSGVLLNMGVPQGSILGPFLFLVYINDYLSLLKPVTRSYY 292
           +++K +LSG I K+      +S  L  +G+PQGSIL  FL   Y+ D +      T+   
Sbjct: 680 KMLKEHLSGHIVKIG-----NSQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSFTKKKG 734

Query: 293 SLMI 304
           S+++
Sbjct: 735 SVLL 738


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -2

Query: 542 LGINCYTKKNCQSTSSSVSPLTVIL---VSTCLTLGVV 438
           LG++ +T K C+        +T++L   VS C+ L ++
Sbjct: 16  LGVDDFTSKRCREIDKKALLITILLTFFVSLCVFLSII 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,712
Number of Sequences: 5004
Number of extensions: 74069
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)