Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10527
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    38   0.013
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    30   2.0  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    30   2.6  
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486...    30   2.6  
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...    29   3.5  
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684...    29   6.1  
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629...    29   6.1  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +2

Query: 29  DLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMGVPQ 208
           D  KAFD +EH+ +L  + H G     +E ++   S     V + G   +      GV Q
Sbjct: 457 DFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQ 516

Query: 209 GSILGPFLFLV 241
           G  L   LF++
Sbjct: 517 GVPLSLLLFVL 527


>01_01_0517 +
           3803740-3806106,3806226-3806312,3806397-3807035,
           3807118-3807282,3807363-3807657,3807739-3807953,
           3808125-3808430,3808539-3808602,3808735-3808974,
           3809150-3809253
          Length = 1493

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +2

Query: 32  LSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMGVPQG 211
           ++K F+C+       +L   GIR  S  +   Y  G +     + +R+SG ++N+     
Sbjct: 356 VAKVFECLSQRHWFFRLQQAGIRARSALVAVVYQKGLVLSSQSRQSRTSGEMINIISVDA 415

Query: 212 SILGPFLFLVYIND 253
             +G  LF  Y++D
Sbjct: 416 DRVG--LFSWYMHD 427


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 20  VFCDLSKAFDCVEHNTLLRKL 82
           V  D+SKAFDCV H+ +L+ +
Sbjct: 293 VVADVSKAFDCVSHDMVLKMI 313


>04_01_0097 -
           998766-999383,999479-999861,1000021-1000398,
           1000486-1000711,1000799-1001323,1003032-1003164,
           1004353-1004435,1004645-1005349,1005483-1005556,
           1006290-1006392,1006485-1006727
          Length = 1156

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 567 KLASRLSSAAFAVKKIRMYINEDTAR-LVYFSYFHSVMSYGILLWGNAADVETIFILQKR 743
           +L SRL +    V    + + E  A  L      HSV S G L W +   V   F +  R
Sbjct: 530 RLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFLFWRSGETVSRYFHIVLR 589

Query: 744 AI 749
           A+
Sbjct: 590 AM 591


>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +2

Query: 158 VKGTRSSGVLLNMGVPQGSILGPFLFLVYINDYLSLLKPVTRSYYSLMIHHYCLKLNDIW 337
           ++ T  S V  NM + Q  I GP   ++  ND   ++K    S Y L    +   LN   
Sbjct: 429 IQPTIFSDVQDNMRIAQEEIFGPVQSILKFNDLNEVIKRANASQYGLAAGVFTNNLNTA- 487

Query: 338 KIMTM*MMLSRAWYIGLVLIICY 406
                   L+RA  +G V + C+
Sbjct: 488 ------NTLTRALRVGTVWVNCF 504


>02_05_0854 -
           32267047-32267298,32267383-32268194,32268289-32268421,
           32268530-32268619
          Length = 428

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 513 VFLGITVDSKLQWGPH-ICK 569
           +F G T DS+L WGPH IC+
Sbjct: 131 LFEGGTPDSRLDWGPHMICR 150


>02_05_0853 +
           32261705-32261794,32261895-32262027,32262117-32262928,
           32263020-32263271
          Length = 428

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 513 VFLGITVDSKLQWGPH-ICK 569
           +F G T DS+L WGPH IC+
Sbjct: 131 LFEGGTPDSRLDWGPHMICR 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,093,258
Number of Sequences: 37544
Number of extensions: 414993
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)