Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10527
(837 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 62 7e-10
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 62 7e-10
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 58 1e-08
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 58 1e-08
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 58 1e-08
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 58 1e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 57 3e-08
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 57 3e-08
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 53 6e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 52 7e-07
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 52 1e-06
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 52 1e-06
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 52 1e-06
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 52 1e-06
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 52 1e-06
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 52 1e-06
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 51 2e-06
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 51 2e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 50 3e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 50 3e-06
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 49 9e-06
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 48 1e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 48 2e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 45 1e-04
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 42 0.001
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 37 0.030
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 35 0.12
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 34 0.21
AY061439-1|AAL28987.1| 183|Drosophila melanogaster LD37169p pro... 30 4.5
AE014298-2885|AAF48980.1| 183|Drosophila melanogaster CG14207-P... 30 4.5
AE014298-2884|AAN09508.1| 192|Drosophila melanogaster CG14207-P... 30 4.5
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 62.5 bits (145), Expect = 7e-10
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
V D+ AFD V H+ LL KL G +++++++L+ R V++ ++S+ +LN G
Sbjct: 606 VTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAG 665
Query: 200 VPQGSILGPFLFLVYIND 253
VPQGS+LGP LF ++ +D
Sbjct: 666 VPQGSVLGPTLFNIFTHD 683
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 62.5 bits (145), Expect = 7e-10
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
V D+ AFD V H+ LL KL G +++++++L+ R V++ ++S+ +LN G
Sbjct: 554 VTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAG 613
Query: 200 VPQGSILGPFLFLVYIND 253
VPQGS+LGP LF ++ +D
Sbjct: 614 VPQGSVLGPTLFNIFTHD 631
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 58.4 bits (135), Expect = 1e-08
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 23 FCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGV-LLNMG 199
F D+++AFD V H+ LL KL I +L+++YLS R V + G +S + + G
Sbjct: 183 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 241
Query: 200 VPQGSILGPFLFLVYINDYLSLLKPVTRSY 289
VPQGSILGP L+ +Y +D + P+ + Y
Sbjct: 242 VPQGSILGPVLYSIYSSD---MPYPIVKDY 268
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 58.4 bits (135), Expect = 1e-08
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 23 FCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGV-LLNMG 199
F D+++AFD V H+ LL KL I +L+++YLS R V + G +S + + G
Sbjct: 630 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 688
Query: 200 VPQGSILGPFLFLVYINDYLSLLKPVTRSY 289
VPQGSILGP L+ +Y +D + P+ + Y
Sbjct: 689 VPQGSILGPVLYSIYSSD---MPYPIVKDY 715
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 58.4 bits (135), Expect = 1e-08
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 23 FCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGV-LLNMG 199
F D+++AFD V H+ LL KL I +L+++YLS R V + G +S + + G
Sbjct: 630 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 688
Query: 200 VPQGSILGPFLFLVYINDYLSLLKPVTRSY 289
VPQGSILGP L+ +Y +D + P+ + Y
Sbjct: 689 VPQGSILGPVLYSIYSSD---MPYPIVKDY 715
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 58.4 bits (135), Expect = 1e-08
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 23 FCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGV-LLNMG 199
F D+++AFD V H+ LL KL I +L+++YLS R V + G +S + + G
Sbjct: 630 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 688
Query: 200 VPQGSILGPFLFLVYINDYLSLLKPVTRSY 289
VPQGSILGP L+ +Y +D + P+ + Y
Sbjct: 689 VPQGSILGPVLYSIYSSD---MPYPIVKDY 715
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 56.8 bits (131), Expect = 3e-08
Identities = 37/90 (41%), Positives = 51/90 (56%)
Frame = +2
Query: 11 ALGVFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLL 190
A+G F D+ +AFD V H LL K + L ++KS+L R V V G +SS +
Sbjct: 580 AVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDGYKSSIKPI 638
Query: 191 NMGVPQGSILGPFLFLVYINDYLSLLKPVT 280
GVPQGS+LGP L+ V+ +D + PVT
Sbjct: 639 AAGVPQGSVLGPTLYSVFASD-MPTHTPVT 667
Score = 29.5 bits (63), Expect = 6.0
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LGIT+D KL + HI + + + + R ++ +Y S + YG
Sbjct: 752 YLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYG 811
Query: 687 ILLWGNAA--DVETIFILQKRAIRAI 758
+ ++G AA + I ILQ + +R I
Sbjct: 812 LQVYGIAAKSHLNKIRILQAKTLRRI 837
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 56.8 bits (131), Expect = 3e-08
Identities = 37/90 (41%), Positives = 51/90 (56%)
Frame = +2
Query: 11 ALGVFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLL 190
A+G F D+ +AFD V H LL K + L ++KS+L R V V G +SS +
Sbjct: 382 AVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDGYKSSIKPI 440
Query: 191 NMGVPQGSILGPFLFLVYINDYLSLLKPVT 280
GVPQGS+LGP L+ V+ +D + PVT
Sbjct: 441 AAGVPQGSVLGPTLYSVFASD-MPTHTPVT 469
Score = 29.5 bits (63), Expect = 6.0
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LGIT+D KL + HI + + + + R ++ +Y S + YG
Sbjct: 554 YLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYG 613
Query: 687 ILLWGNAA--DVETIFILQKRAIRAI 758
+ ++G AA + I ILQ + +R I
Sbjct: 614 LQVYGIAAKSHLNKIRILQAKTLRRI 639
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 52.8 bits (121), Expect = 6e-07
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
+F D+++AFD V + L+ K+ + + +L+KSYL R+ V + SS + G
Sbjct: 118 LFLDVAQAFDRVWLDGLMFKIIQLLPQNIH-KLLKSYLDKRVFAVRCSSSTSSDFTIEAG 176
Query: 200 VPQGSILGPFLFLVYIND 253
VPQGS+LGP L+ +Y D
Sbjct: 177 VPQGSVLGPILYTLYTAD 194
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 52.4 bits (120), Expect = 7e-07
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
VF D+ +AFD V H+ L+ K+ ++KSYL R V V+ + S ++ G
Sbjct: 582 VFIDMQQAFDRVWHDGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAG 640
Query: 200 VPQGSILGPFLFLVYIND 253
VPQGS+LGP L+ V+ D
Sbjct: 641 VPQGSVLGPLLYSVFTAD 658
Score = 46.4 bits (105), Expect = 5e-05
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKIRMYINEDTA------RLVYFSYFHSVM 677
+LGIT+D +L +GPH+ R ++++R +N + R VY +
Sbjct: 753 YLGITLDKRLTFGPHLKATTRRCYQ---RMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIW 809
Query: 678 SYGILLWGNAA--DVETIFILQKRAIRAIYIC 767
YGI +WG AA + I +LQ RA+RAI C
Sbjct: 810 LYGIQIWGIAAKSNYNRIQVLQNRAMRAITDC 841
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 510 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGA 568
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 569 GVPQGSNLGPILYSIFSSD 587
Score = 36.7 bits (81), Expect = 0.039
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL PH+ K+ + +A + I R + +T L+ S + Y
Sbjct: 683 YLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYA 742
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 743 IAAWGPLVTDAQIRRIQVEENRKMRDI 769
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGA 684
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 685 GVPQGSNLGPILYSIFSSD 703
Score = 36.7 bits (81), Expect = 0.039
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL PH+ K+ + +A + I R + +T L+ S + Y
Sbjct: 799 YLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYA 858
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 859 IAAWGPLVTDAQIRRIQVEENRKMRDI 885
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGA 684
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 685 GVPQGSNLGPILYSIFSSD 703
Score = 36.7 bits (81), Expect = 0.039
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL PH+ K+ + +A + I R + +T L+ S + Y
Sbjct: 799 YLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYA 858
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 859 IAAWGPLVTDAQIRRIQVEENRKMRDI 885
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 588 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGA 646
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 647 GVPQGSNLGPILYSIFSSD 665
Score = 36.7 bits (81), Expect = 0.039
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL PH+ K+ + +A + I R + +T L+ S + Y
Sbjct: 761 YLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYA 820
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 821 IAAWGPLVTDAQIRRIQVEENRKMRDI 847
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGA 684
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 685 GVPQGSNLGPILYSIFSSD 703
Score = 36.7 bits (81), Expect = 0.039
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL PH+ K+ + +A + I R + +T L+ S + Y
Sbjct: 799 YLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYA 858
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 859 IAAWGPLVTDAQIRRIQVEENRKMRDI 885
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 51.6 bits (118), Expect = 1e-06
Identities = 29/90 (32%), Positives = 48/90 (53%)
Frame = +2
Query: 29 DLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMGVPQ 208
D +AFD V + +L +L +GI LIK++++ R +V + S+ +L+ G+PQ
Sbjct: 584 DFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQ 643
Query: 209 GSILGPFLFLVYINDYLSLLKPVTRSYYSL 298
GS L LF++ I D ++ Y SL
Sbjct: 644 GSPLSVVLFMIAIEDINDIVTRHKDIYISL 673
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 50.8 bits (116), Expect = 2e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRTGQIGA 684
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 685 GVPQGSNLGPLLYSIFSSD 703
Score = 34.3 bits (75), Expect = 0.21
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL H+ KL + ++A + I R + T L+ S + Y
Sbjct: 799 YLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYA 858
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 859 IAAWGPLVTDAQIRRIQVEENRKMRDI 885
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 50.8 bits (116), Expect = 2e-06
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKV-DVKGTRSSGVLLNM 196
VF D+S+AFD V H LL KL + + +++SYL+ R +V D G S +
Sbjct: 638 VFLDISEAFDRVWHEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRTGQIGA 696
Query: 197 GVPQGSILGPFLFLVYIND 253
GVPQGS LGP L+ ++ +D
Sbjct: 697 GVPQGSNLGPLLYSIFSSD 715
Score = 37.9 bits (84), Expect = 0.017
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+T+DSKL H+ KL + S+A + I R + T L+ S + Y
Sbjct: 811 YLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTKILILKSVLSPIWQYA 870
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + + + + R IR I
Sbjct: 871 IAAWGPLVTDAQIRRVQVEENRKIRDI 897
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 50.4 bits (115), Expect = 3e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
+F D+++AFD V + LL K+ + +L+KSYL R+ + + S + G
Sbjct: 577 IFLDVAQAFDRVWLDGLLFKIIKLLPQNTH-KLLKSYLYNRVFAIRCDTSTSRDCAIEAG 635
Query: 200 VPQGSILGPFLFLVYINDY 256
VPQGS+LGP L+ +Y D+
Sbjct: 636 VPQGSVLGPILYTLYTADF 654
Score = 37.9 bits (84), Expect = 0.017
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +D +L W HI + L A + + R ++ + L+Y S + +YG
Sbjct: 738 YLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYG 797
Query: 687 ILLWGNAADVETIFILQKRAIRAIYICT 770
LWGNA+ I I+Q+ R + I T
Sbjct: 798 SELWGNASR-SNIDIIQRAQSRILRIIT 824
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 50.4 bits (115), Expect = 3e-06
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
VF D+S+AFD V + L+ K+ + + +L+KSYL R V S+ + G
Sbjct: 579 VFLDVSQAFDKVWLDGLMFKIK-ISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAG 637
Query: 200 VPQGSILGPFLFLVYIND 253
VPQGS+LGP L+L+Y D
Sbjct: 638 VPQGSVLGPTLYLIYTAD 655
Score = 35.1 bits (77), Expect = 0.12
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKIRMYINE------DTARLVYFSYFHSVM 677
+LG+ +D +L W HI ++L A + IN D L+Y S +
Sbjct: 740 YLGVHLDRRLTWRRHIEAKKTQLKLKA---NNLHWLINSGSPLSLDHKVLLYNSILKPIW 796
Query: 678 SYGILLWGNA--ADVETIFILQKRAIRAI 758
+YG LWGNA ++++ I Q + +R I
Sbjct: 797 TYGSQLWGNASNSNIDIIQRAQSKILRTI 825
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 48.8 bits (111), Expect = 9e-06
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
+F D+ +AFD V H L K+ + L+KSYL GR V S+ + G
Sbjct: 581 LFLDIREAFDRVWHIGLQLKIKQT-LPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAG 639
Query: 200 VPQGSILGPFLFLVYIND 253
VPQGS+LGP L+ +Y +D
Sbjct: 640 VPQGSVLGPLLYCLYSHD 657
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 48.4 bits (110), Expect = 1e-05
Identities = 32/87 (36%), Positives = 47/87 (54%)
Frame = +2
Query: 14 LGVFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLN 193
LG F D AFD VE + L +L G R + L +S+ SGR + V + + V +
Sbjct: 573 LGTFVDFKGAFDNVEWSAALSRLADLGCR--EMGLWQSFFSGR-RAVIRSSSGTVEVPVT 629
Query: 194 MGVPQGSILGPFLFLVYINDYLSLLKP 274
G PQGSI GPF++ + ++ L L+P
Sbjct: 630 RGCPQGSISGPFIWDILMDVLLQRLQP 656
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
+F D+++AFD V + LL K+ + +L+KSYL + + + S + G
Sbjct: 577 IFLDVAQAFDRVWLDGLLFKIIKLLPQNTH-KLLKSYLYNTVFAIRCDTSTSRDCAIEAG 635
Query: 200 VPQGSILGPFLFLVYINDY 256
VPQGS+LGP L+ +Y D+
Sbjct: 636 VPQGSVLGPILYTLYTADF 654
Score = 37.9 bits (84), Expect = 0.017
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +D +L W HI + L A + + R ++ + L+Y S + +YG
Sbjct: 738 YLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYG 797
Query: 687 ILLWGNAADVETIFILQKRAIRAIYICT 770
LWGNA+ I I+Q+ R + I T
Sbjct: 798 SELWGNASR-SNIDIIQRAQSRILRIIT 824
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 45.2 bits (102), Expect = 1e-04
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Frame = +2
Query: 5 HNALGVFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGV 184
H +L V D S+AFD V ++++++L + ++ IK+++S R V V SS +
Sbjct: 569 HTSL-VTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPL 627
Query: 185 LLNMGVPQGSILGPFLFLVYIN---DYLSLLKPVTRSYYS 295
L G+PQGS + LFL+ N + +SL K + + Y+
Sbjct: 628 PLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYA 667
Score = 32.7 bits (71), Expect = 0.64
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 519 LGITVDSKLQWGPHICKLASRLSSAAFAVK---KIRMYINEDTARLVYFSYFHSVMSYGI 689
LGIT+++K +W HI L +L + +K ++ N T V + + + YG+
Sbjct: 740 LGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGL 799
Query: 690 LLWGNA 707
L+G+A
Sbjct: 800 FLYGHA 805
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 41.9 bits (94), Expect = 0.001
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 29 DLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQ-KVDVKGTRSSGVLLNMGVP 205
D+ AF+ +L + + G+ +I +Y R+ V G RS V + GVP
Sbjct: 557 DVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQV--SAGVP 614
Query: 206 QGSILGPFLFLVYINDYLSLLKP 274
QGS+LGP L+ + + LS+ KP
Sbjct: 615 QGSVLGPILWNIMYDGILSISKP 637
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 37.1 bits (82), Expect = 0.030
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +2
Query: 29 DLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMGVPQ 208
D+SKAFD + H ++ L YG ++ +++ G ++ G S + GV Q
Sbjct: 482 DVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQ 541
Query: 209 GSILGPFLFLVYINDYLSLL 268
G L P LF + ++ L L
Sbjct: 542 GDPLSPILFNLVMDRLLRTL 561
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 35.1 bits (77), Expect = 0.12
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 172 IFRCLT*YGCSSGFHIGSLPISCIYQ*LPKF-IETRHEVVLFADDTSLLFKIKRHLEDYD 348
+FR G G +G L + +Y + + + R E+V FADD +LL K + +
Sbjct: 42 VFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEE 101
Query: 349 DVNDAISRVVHWFSVXXXXXXXKKTKCIKFTTPNVKQVDTNITVSGETL 495
N I + HW S +KTK + ++ K V+T G TL
Sbjct: 102 MCNRNIRAIEHWLSSMGLELAPEKTKAVLISSR--KAVETATVEVGGTL 148
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 34.3 bits (75), Expect = 0.21
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 516 FLGITVDSKLQWGPHICKLASRLSSAAFAVKKI---RMYINEDTARLVYFSYFHSVMSYG 686
+LG+ +DSKL H+ KL + ++A + I R + T L+ S + Y
Sbjct: 14 YLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYA 73
Query: 687 ILLWG---NAADVETIFILQKRAIRAI 758
I WG A + I + + R +R I
Sbjct: 74 IAAWGPLVTDAQIRRIQVEENRKMRDI 100
>AY061439-1|AAL28987.1| 183|Drosophila melanogaster LD37169p
protein.
Length = 183
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Frame = -2
Query: 788 PSRIPSGA-YINSTNSPLLQDEN-------RFDIGSIAP 696
PSRIP Y++ +SPL+QDE RFD+ AP
Sbjct: 68 PSRIPKQQNYVSDISSPLIQDEGDNKVLKLRFDVSQYAP 106
>AE014298-2885|AAF48980.1| 183|Drosophila melanogaster CG14207-PA,
isoform A protein.
Length = 183
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Frame = -2
Query: 788 PSRIPSGA-YINSTNSPLLQDEN-------RFDIGSIAP 696
PSRIP Y++ +SPL+QDE RFD+ AP
Sbjct: 68 PSRIPKQQNYVSDISSPLIQDEGDNKVLKLRFDVSQYAP 106
>AE014298-2884|AAN09508.1| 192|Drosophila melanogaster CG14207-PB,
isoform B protein.
Length = 192
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Frame = -2
Query: 788 PSRIPSGA-YINSTNSPLLQDEN-------RFDIGSIAP 696
PSRIP Y++ +SPL+QDE RFD+ AP
Sbjct: 77 PSRIPKQQNYVSDISSPLIQDEGDNKVLKLRFDVSQYAP 115
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,552,030
Number of Sequences: 53049
Number of extensions: 767068
Number of successful extensions: 1992
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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