Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10527
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 64 1e-10
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 45 8e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 40 0.002
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 39 0.004
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 39 0.004
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 36 0.047
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 35 0.082
Z81538-1|CAB04383.1| 569|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF003151-18|AAK18915.1| 160|Caenorhabditis elegans Hypothetical... 28 7.2
Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical p... 28 9.5
AY013955-1|AAG59937.1| 27|Caenorhabditis elegans LINE-like rev... 28 9.5
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 38 KAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVL-LNMGVPQGS 214
KAFD V H+ LL+KLH +GI + +LS R V V + ++ GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 215 ILGPFLFLVYINDYLSLLKP 274
+ GPFLFL++IN L + P
Sbjct: 62 VSGPFLFLIFINSLLLSVPP 81
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/83 (39%), Positives = 46/83 (55%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
++ D SKAFD + H+ LL KL L + +LS R +V + T SS G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 200 VPQGSILGPFLFLVYINDYLSLL 268
VPQG++L P LF +Y+ND S+L
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSIL 99
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 77 KLHHYGIRGVSLELIKSYLSGRIQKVDV-KGTRSSGVLLNMGVPQGSILGPFLFLVYIND 253
KL +G+ ++ K +L R V + K + ++ GVPQGS+ GP LF+++IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 254 YLSLLKP 274
L L P
Sbjct: 899 LLIDLAP 905
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 32 LSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKG-TRSSGVLLNMGVPQ 208
LS AFD V H L+ KL+ + + + +S + V V S +G P+
Sbjct: 894 LSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPR 953
Query: 209 GSILGPFLFLVYINDYL 259
GS F+FLV+IN L
Sbjct: 954 GSESRQFMFLVFINSLL 970
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
VF D KAFD VEH + + L G G ++L+K R V + G
Sbjct: 518 VFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKG 576
Query: 200 VPQGSILGPFLF 235
V QG + P LF
Sbjct: 577 VRQGDPISPNLF 588
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
VF D KAFD VEH + + L G G ++L+K R V + G
Sbjct: 689 VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKG 747
Query: 200 VPQGSILGPFLF 235
V QG + P LF
Sbjct: 748 VRQGDPISPNLF 759
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
VF D KAFD VEH + + L G G ++L+K R V + G
Sbjct: 428 VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKG 486
Query: 200 VPQGSILGPFLF 235
V QG + P LF
Sbjct: 487 VRQGDPISPNLF 498
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 35.5 bits (78), Expect = 0.047
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +2
Query: 20 VFCDLSKAFDCVEHNTLLRKLHHYGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMG 199
VF D KAFD VEH + + L G ++L+K R V + G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 200 VPQGSILGPFLF 235
V QG + P LF
Sbjct: 99 VRQGDPISPNLF 110
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 34.7 bits (76), Expect = 0.082
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 29 DLSKAFDCVEHNTLLRKLHH-YGIRGVSLELIKSYLSGRIQKVDVKGTRSSGVLLNMGVP 205
DL AFD V L L GI + +YL R+ + S L GVP
Sbjct: 475 DLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVP 534
Query: 206 QGSILGPFLFLVYIND 253
QGS++ P LF Y+ D
Sbjct: 535 QGSVISPNLFTFYLKD 550
>Z81538-1|CAB04383.1| 569|Caenorhabditis elegans Hypothetical
protein F45H10.1 protein.
Length = 569
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 664 FIVLC---PMAFCYGAMLPMSKRFSS 732
FI+LC P+ FC+ + PM KRF S
Sbjct: 533 FILLCCFPPVFFCFSQLFPMLKRFPS 558
>AF003151-18|AAK18915.1| 160|Caenorhabditis elegans Hypothetical
protein D1007.9 protein.
Length = 160
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 683 IGHNTMKITKINQACRIFINIHSYFFYRKRC 591
+G+N +I K N A + ++ YFF RK C
Sbjct: 113 LGNNIFEILKKNSATEVLSSMVLYFFTRKIC 143
>Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical
protein D2013.9 protein.
Length = 662
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 235 SCIYQ*LPKFIETRHEVVLFADDTSLLFKIKRHLEDY-DDVNDA 363
S I+ LP I + ++ ++ADDT L +K H +Y DD+ A
Sbjct: 315 SAIFTSLP--ILKKRKIKVYADDTQLTEHLKNHKVEYVDDIKKA 356
>Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical
protein D2013.9 protein.
Length = 662
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 235 SCIYQ*LPKFIETRHEVVLFADDTSLLFKIKRHLEDY-DDVNDA 363
S I+ LP I + ++ ++ADDT L +K H +Y DD+ A
Sbjct: 315 SAIFTSLP--ILKKRKIKVYADDTQLTEHLKNHKVEYVDDIKKA 356
>AY013955-1|AAG59937.1| 27|Caenorhabditis elegans LINE-like
reverse transcriptase protein.
Length = 27
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 212 SILGPFLFLVYINDYLSLLKP 274
S+ GP LF+++IND L L+P
Sbjct: 1 SVSGPLLFILFINDLLIDLEP 21
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,153,240
Number of Sequences: 27780
Number of extensions: 407361
Number of successful extensions: 1109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -