Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10527
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 573 LTCICEDPTAAWNQLLYQEKLSIHKLQCLSTYSNISVNLFN 451
           LT  C D  A WN L  Q  L  + ++ +  +S +  +L N
Sbjct: 431 LTMSCSDKIARWNVLGVQGALLSYFIEPIYFHSIVLGSLLN 471


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 227 FLFLVYINDYLSLLKPVTRSYYSLMIHHY 313
           +LF  Y  D +   K  T+  + L I HY
Sbjct: 43  YLFCDYDRDIIPEQKNATKIDFGLSIQHY 71


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 732 LQKRAIRAIYICTRGNP*GTSLRKS 806
           +QK+    +Y C+  N  G S R+S
Sbjct: 578 VQKKGDAGVYTCSARNKQGHSARRS 602


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 732 LQKRAIRAIYICTRGNP*GTSLRKS 806
           +QK+    +Y C+  N  G S R+S
Sbjct: 578 VQKKGDAGVYTCSARNKQGHSARRS 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,100
Number of Sequences: 438
Number of extensions: 4837
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)