Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10527
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15236.1 68417.m02335 ABC transporter family protein similar ...    31   0.95 
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    31   0.95 
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    31   1.3  
At3g02330.1 68416.m00216 pentatricopeptide (PPR) repeat-containi...    28   6.7  
At1g09710.1 68414.m01090 myb family transcription factor contain...    28   6.7  

>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 808 FDFLKLVPQGFPRVHI*IARIALFCRMK 725
           F  +KL+  G P + + ++RIA+FC+ K
Sbjct: 546 FSLIKLLADGLPELTLTVSRIAVFCKQK 573


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 701 QCCRCRNDFHPAEEGYSCYLYMHP 772
           QCC  R+ FHP    Y+   Y+HP
Sbjct: 64  QCCMNRSAFHPPHASYAPSCYVHP 87


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 808 FDFLKLVPQGFPRVHI*IARIALFCRMK 725
           F   KL+  G P + + I+RIA+FC+ K
Sbjct: 530 FSLFKLLADGLPELTLTISRIAVFCKQK 557


>At3g02330.1 68416.m00216 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 861

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 677 VLWHFAMGQCCRCRNDFHPAEEGYSCYLYMHPRES 781
           V+W   +G C   RN+   AEE  +  L + P++S
Sbjct: 731 VIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 765


>At1g09710.1 68414.m01090 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 689

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 287 YYSLMIHHYCLKLNDIWKIM 346
           YY+L +HHY   ++D W I+
Sbjct: 247 YYNLFMHHYLYSVDDEWWIL 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,891
Number of Sequences: 28952
Number of extensions: 365146
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)