Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10526X
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    26   2.8  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   3.7  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    25   4.8  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    24   8.5  

>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 262 FNCLSLPSFS*MIDNAALCRHH---PCIPC 182
           +N ++L  +  ++DN A+CR+H    CI C
Sbjct: 26  WNAVALWQWDIVVDNCAICRNHIMDLCIEC 55


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 329 LLFLRSIIMKFVHAKRSIWTLLVQLFISAKFF 234
           +L  R  + KFV A  ++WT+++ L  +A  F
Sbjct: 146 MLLQRFPVSKFVAASTALWTIIIFLHCAAYNF 177


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +2

Query: 119 LRDIMTSIKPKNCSRVSSKNITGNTRMMPTESCIINHSRKTWQR*TIEREESIYY 283
           L+ + TS  PK+C R  S      T     +  ++++ + T  + +I R+ + Y+
Sbjct: 94  LKPVATST-PKSCMRTGSNLFLNETVKHVPDERLVSNIKNTQTKDSITRDSAYYH 147


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 344 QSEPALLFLRSIIMKFVHAKRSIWTLL 264
           +S PA LFL  +IM FV     IWT++
Sbjct: 70  ESGPASLFLSYVIMSFV-----IWTVM 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,905
Number of Sequences: 5004
Number of extensions: 31523
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)