Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10526X
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 27 4.8
SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1) 27 4.8
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2) 27 4.8
SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_38844| Best HMM Match : ATP-synt_8 (HMM E-Value=5.4) 27 8.5
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 35.5 bits (78), Expect = 0.018
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 130 YDLNQAKELFESIVKEHNREYKDDADRELHYQSFKKNLAEINN*TRR 270
+++ + +F+ VK+H + YKD+ + + FK NL I++ RR
Sbjct: 547 HNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRR 593
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 91 VMASSADTDPPRHYDLNQAKELFESIVKEHNREYKDDADREL 216
V+AS A+ DP Y L K+LF + ++ + E DD DR L
Sbjct: 1941 VVASLAEVDPMYQYSLKYFKQLFNACIE--SSEKTDDLDRRL 1980
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 225 LIMQLSVGIILVFPVMFFDDTLEQFFGLIEVIMS 124
L+M+ +LV P++FF+ +E F G+ ++I S
Sbjct: 1199 LVMEYVERPVLVPPLIFFNHVIEMFVGISQMIRS 1232
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 118 PPRHY--DLNQAKELFESIVKEHNREYK 195
PP Y DLN AKEL E+ +K+ E K
Sbjct: 225 PPEEYYIDLNHAKELLENCLKQATSESK 252
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 52 MNFVSVALLIATVVMASSADTDPPRHYDLNQAKELFESIVKEHN 183
+ F +++ T + + + DPP H N+A +F SIV N
Sbjct: 528 IEFPGISISRNTHITSPGSGCDPPLHVPTNEAVYMFYSIVNGTN 571
>SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)
Length = 248
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 46 AKMNFVSVALLIATVVMASSADTDPPRHYDLNQA 147
A + F++ +L+ TV+ A+ +TD R NQA
Sbjct: 98 AAVLFIAAMILVVTVLWATKQETDRNRQMSRNQA 131
>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 112 TDPPRHYDLNQAKELFESIVKEHNREYKDDADRELHYQSFKKNLAE 249
+D P+ +L+ + LFE+ + DD RE+ + +FK L E
Sbjct: 520 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 565
>SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2)
Length = 388
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 LRDIMTSIKPKNCS-RVSSKNITGNTRMMPTESCIINHSRKT 241
+R +I+P N + R SS+ I ++R + SC I HS +T
Sbjct: 127 IRPSSRTIRPSNRAIRPSSRAIRPSSRTIRPSSCAIRHSDRT 168
>SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 112 TDPPRHYDLNQAKELFESIVKEHNREYKDDADRELHYQSFKKNLAE 249
+D P+ +L+ + LFE+ + DD RE+ + +FK L E
Sbjct: 139 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 184
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 115 DPPRHYDLNQAKELFESIVKEHNREYKDDADRELHYQSFKKNLAE 249
+PP H D + K+L E + KE + D++++L + KK+L E
Sbjct: 283 NPPPHLDEEKIKQLHEEL-KEEIKSMAKDSEKDL--EDAKKDLKE 324
>SB_38844| Best HMM Match : ATP-synt_8 (HMM E-Value=5.4)
Length = 257
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 286 NVVYGLFSFNCLSLPSF 236
NV+ G F+F CLSLP +
Sbjct: 2 NVIIGTFAFVCLSLPLY 18
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,927
Number of Sequences: 59808
Number of extensions: 226435
Number of successful extensions: 635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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