Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10525
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.8  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    27   2.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   8.5  

>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/40 (22%), Positives = 24/40 (60%)
 Frame = +1

Query: 601 KLFMIE*NNVLRLCRTHYYLQKVSRQHMSNYYSCAAISSF 720
           +++++  + ++R+    YY +K  +Q +  ++SC+ I  F
Sbjct: 124 QVYLVGFDTLIRILDCKYYKEKAMQQVLQPFFSCSQILCF 163


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 90  IEVNEIPSRYVVCSSADSVINIKV 161
           +EV  I   YVV S+AD+VIN++V
Sbjct: 53  LEVETIFEDYVVQSNADNVINLEV 76


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 617 NKIMYYDFVEHIIIYKKCRDSICLT 691
           N  ++YD+ +H +IY++  ++I L+
Sbjct: 823 NSTIWYDWYDHKVIYRQHNENITLS 847


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,782
Number of Sequences: 5004
Number of extensions: 60691
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)