Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10525
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)                29   5.2  
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   29   5.2  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)                  28   9.1  
SB_17533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 186 VHTYIYNKILLYLSHCLHYYILHSVKVFHSPQYFLKDKSHIGDDHCLH 43
           V  Y+ + + +YLSH +  Y+ HSV ++ S     KD SH  D +  H
Sbjct: 7   VEMYLSHSVDMYLSHSVDMYLSHSVDMYLSHSVD-KDLSHSLDMYLSH 53


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 156 LYLSHCLHYYILHSVKVFHSPQYFLK 79
           +Y+SH L YYILH +   H+  Y+ +
Sbjct: 847 VYISHTLRYYILHDID--HTKPYYFR 870


>SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)
          Length = 421

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 192 YVVHTYIYNKILLYLSHCLHYYILH---SVKVFHS-PQYFLKDKSHIGDDHCLHV 40
           + +H  + NK+   L+ C   ++LH      VFH+ P Y    ++H  D+  LH+
Sbjct: 182 HFMHMMVSNKVAFKLAWCFMLHLLHQKDKAAVFHALPWYVSPCQAHPLDEIELHI 236


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 198 CLYVVHTYIYNKILLYLSHCLHYY 127
           C Y++H   Y   L Y SHC HYY
Sbjct: 343 CHYLLHKLCYCVALQYCSHC-HYY 365



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 198 CLYVVHTYIYNKILLYLSHCLHYY 127
           C Y++H   Y   L Y SHC HYY
Sbjct: 180 CHYLLHKLCYCVALQYRSHC-HYY 202



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 198 CLYVVHTYIYNKILLYLSHCLHYY 127
           C Y++H   Y   L Y SHC HYY
Sbjct: 252 CHYLLHKLCYCVALQYRSHC-HYY 274


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 194 YMLYIHTYIIKYFYIYHTVCTTTY 123
           + +YI+ YI  Y YIY  + T TY
Sbjct: 9   FYIYIYIYIYIYIYIYIYIYTYTY 32


>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
          Length = 456

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 201 PCLYVVHT-YIYNKILLYLSHCLHYYILHSVKVFHSPQYFLKDKSHIGDDHCLHVFFRYA 25
           P +Y++ + YIY+ + +Y+ +    YIL S  ++ + Q ++  +     D    + F YA
Sbjct: 62  PGIYILPSRYIYSTVQVYIFYRPGIYILPSRYIYSTVQVYIFYRPDYFPDDQYFIIFEYA 121


>SB_17533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 629 TLFYSIMNSFRRARDVKNILGDFFTPWVTL 540
           +LFY+I    R   +VKN L D FTP  +L
Sbjct: 9   SLFYNISYQNRGNNEVKNTLTDNFTPRASL 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,442,261
Number of Sequences: 59808
Number of extensions: 402681
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)